Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0357 ATGGAAAGAATGTTCCCTACAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGTCTTGTTCTTACCACTGACCCGAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAACTTGGAGGACCTGACAAAGCCACTCCTAAAACTATTATGAGGGTTATGGGTGTCAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAAGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCAGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATTGAGGTGCAAAGAAGACTTCATGAACAGCTTGAGGTGCAAAAACACCTTCAACTAAGGATTGAAGCTCAAGGAAAATACATGCAAAGTATATTAGAGAAGGCTTATCAAACCCTTGCAGGTGAAAACATGGCATCAGCTACAACTAACCTAAAGGGTGTTGTTATTGGACCTCAAGGAATTCCAGAAATGGGACTATTGAAAGAATTTGGTACACCTCTTAGTTTCTCATCTTTTCAAGATCTCGACCTTTTCGGCGGCAGCGGCGGCGGCGATCAACTCGACCTTCAACAAACCATGGAAAAACAAACCCTAGACCATCATGGATTCATCCAAATCAATGATAACTTATGTCTTGGCAAGAAGAGGCCAAACCCTAACGCTAACCCTTATAATGGAAACGGAAAGAGTCCTTTAATGTGGAGTGATGATTTAAGGCTTCAAGATTTAGGACCAGCTTCATCATGTTTAGATGATCCTTTCAAAGGTGACCAAATTCAAATTCAAATTGCACCACCATCATTGGATAGAGGAAATGATATTGAAACTATAGATATCTATGATACAAAGCCTTTACTCCAAGGGGAGCTTTTAGGCGAAAAGAAATTCGATGCGTCGATGAATAATAAACTCGAAAGGCCATCGCCAAGAAGAGGCCAACAACTTCATGCTGAAAGGATGAACAATCCTATGATTAGTACTGGTATCATGGCACAAGGTAGAGGCTCACCATTTGGATGA 1137 0.4142 MERMFPTKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASATTNLKGVVIGPQGIPEMGLLKEFGTPLSFSSFQDLDLFGGSGGGDQLDLQQTMEKQTLDHHGFIQINDNLCLGKKRPNPNANPYNGNGKSPLMWSDDLRLQDLGPASSCLDDPFKGDQIQIQIAPPSLDRGNDIETIDIYDTKPLLQGELLGEKKFDASMNNKLERPSPRRGQQLHAERMNNPMISTGIMAQGRGSPFG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0357 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 324 IPR044848 GO:0003700
Psa1g0357 378 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Psa1g0357 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 324 - -
Psa1g0357 378 Gene3D - 34 92 - -
Psa1g0357 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Psa1g0357 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Psa1g0357 378 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Psa1g0357 378 MobiDBLite consensus disorder prediction 359 378 - -
Psa1g0357 378 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0357 Psa-Chr1 20889417 20892356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0357 4 378 G2-like Transcription Factor Family AT1G79430 57.292 9.00e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g0357 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0357 - - ccaj:109805894 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0357 1 20889417 20892356 Psa1g0357 1 20889417 20892356 ECH