LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g0333	ATGAACAACAACATGGCTGATTCTATCCCCATTCACGATGACCCATCAACGATTCCATCGCTCTCAACCGATCAACCTAATGATGCAGGAAATGATGTGAAGTTGAGTTCTAAGGACCAGAGAGATGCTCTGCCAGGTGAGCCTAAGTGTACTGTTTGTGGCCGGTATGGTGAGTATATATGCGATGAAACTGACGACGATGTTTGTAGTTTGGAATGTAAACAGTCAGTAGTATGTCGAATTTCTAAATCCTCGTCTCGTGTTGGAGATCTTCCACCACCTAAAAGGCTACCTGCAGCGGATGTGTGTTTTTATATTAGAGATACTGATTGCAAATCTGGCACGCCGTCTTCGATAGGTGATCAGAGTCAGGCTGAATTGCTTCGGAAAAAACTCGACATTCACGTCAAGGGTTTTGTATCGGCACCGGTTTTGTCGTTCGCTTCCTGTAACCTCCCTGACAAACTCCTGCACAACATCGAAGGAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACCGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATCATTTCTCGTTGTGCGAGTCATCGTTTGACTTATGTTTCGGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACAAGAGAGCTCAGTATACAGGTTGAAGAGCATGCGAAATTGCTCGGAAAAGGATTGCCGTTTAAAACCGCACTTGTGGTTGGTGGTGATGCAATGGCTAGACAAATCTACCGCATTCAACAAGGAGTCGAATTGATTGTTGGAACACCGGGAAGGCTCGTTGATCTTTTAACAAAGCATGAGATTGATTTAGACGACGTAACGACTTTTGTTGTTGATGAGGTGGATTGCATGCTTCAAAGGGGTTTCCGAGATCAGGTCTTAGAGATATTTACGGCTTTGTCGCAACCTCAGGTCTTAATGTATTCGGCAACAATGTCTGATTCTTTAGAGAATATGGCGAACTCTCTCGCAAAAGATACGGTGATTATAACCGTCGGTGAACCTAACAGACCAAATAAGGCCGTGAAGCAGCTAGCTATTTGGGTCGAGTCGAAACAAAAGAAACAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATACGTCGGCTCGAGACTCGGGGCAGATCTACTTGCAAATGCAATTTCAGTTTCAACAGGAATGAGAGCTGTTTCGATTCACGGCGAGAAGTCAATGACTGAAAGGAGAGAAATAATGCAGTCATTTATGGTTGGCGAGTTCCCGGTGGTTGTGGCTACCGGAGTTTTGGGTAGGGGGGTCGATCTATTGGGTGTAAGACAAGTAATTGTATTCGACATGCCGAATTCCATTAAGGAGTATGTGCATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTAAATGATGAGAATAAGAAAGTCTTTGCAGAGTTAGTTGACGTGTTAAAGTCGGGTGCGGCGGCCATACCTAGGGAGCTTATCAATTCACAATATGCCACAGGATTTTTCTCAGGGGGTAAGGGTTCTAAGAAGAGAAAGCATAGATGA	1635	0.4416	MNNNMADSIPIHDDPSTIPSLSTDQPNDAGNDVKLSSKDQRDALPGEPKCTVCGRYGEYICDETDDDVCSLECKQSVVCRISKSSSRVGDLPPPKRLPAADVCFYIRDTDCKSGTPSSIGDQSQAELLRKKLDIHVKGFVSAPVLSFASCNLPDKLLHNIEGAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISRCASHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQIYRIQQGVELIVGTPGRLVDLLTKHEIDLDDVTTFVVDEVDCMLQRGFRDQVLEIFTALSQPQVLMYSATMSDSLENMANSLAKDTVIITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVGSRLGADLLANAISVSTGMRAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKKVFAELVDVLKSGAAAIPRELINSQYATGFFSGGKGSKKRKHR*	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g0333	544	Pfam	Helicase conserved C-terminal domain	377	487	IPR001650	-
	Psa1g0333	544	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	363	526	IPR001650	-
	Psa1g0333	544	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	292	500	IPR027417	-
	Psa1g0333	544	MobiDBLite	consensus disorder prediction	1	33	-	-
	Psa1g0333	544	Gene3D	-	116	353	IPR027417	-
	Psa1g0333	544	Gene3D	-	354	528	IPR027417	-
	Psa1g0333	544	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	31	527	-	-
	Psa1g0333	544	PANTHER	ATP-DEPENDENT RNA HELICASE DDX59-RELATED	31	527	-	-
	Psa1g0333	544	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	134	355	IPR027417	-
	Psa1g0333	544	Gene3D	-	29	87	-	-
	Psa1g0333	544	SMART	ultradead3	164	367	IPR014001	-
	Psa1g0333	544	MobiDBLite	consensus disorder prediction	1	41	-	-
	Psa1g0333	544	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	176	352	IPR014001	-
	Psa1g0333	544	Pfam	HIT zinc finger	48	74	IPR007529	-
	Psa1g0333	544	CDD	SF2_C_DEAD	364	496	-	-
	Psa1g0333	544	Pfam	DEAD/DEAH box helicase	169	339	IPR011545	GO:0003676\|GO:0005524
	Psa1g0333	544	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	145	173	IPR014014	GO:0003724
	Psa1g0333	544	SMART	helicmild6	405	487	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g0333	Psa-Chr1	18295337	18297972	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g0333	146	507	Eukaryotic Initiation Factors Gene Family	AT1G72730	32.425	2.07e-52	182

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g0333	K19466		-	gmx:100781473	810.061