Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0317 ATGTTATCGTTTCGCTATCGTTTCTCTTCTTTCGCAACTCACGCCCCTTTTACACATTCTTCTTCTCGGAGACTCTTCTTCCTTCTTCCTCCTCAAACACACACTACTCTAACCAACATCTCCACAGATCACTCTCTCTTCTGTCTAAAACCCATTAAACAAAACAATGGCTTCTTTTCTATTGCCAATAACATCCATTCTTCTTCTTCTTCCTTCTCTAAAGATTCTCCCTTTTCAGGATTAGAGGATGTTTTTGTGAGCTTCCTCTTTGGAAAGAAAAAGGCAACGGATGTTGCTCATATGGTTTGGAAACATGTTGTTCAGAAAGGAGACACAGTCATTGATGCCACGTGCGGCAATGGTTTTGACACGTTAGAGTTGCTCAATTTGGTAGCTGATGATTCACATAATGGTTATGTGTATGCATTGGACATTCAGAAAGATGCTTTAGATAAGACTTCATTGTTGTTGGAAGAATCGCTTAATTCCTATCAGAAATATGTCAAGCTCTTCAATATTTGCCATAGTAAAATGGAGGAAGTTGTTCAAAGGAATGCCTCAGTTAGGCTTGTTGCCTTCAACTTAGGTTATCTTCCGGGAGGCGACAAAGAAATAATAACAAGATCGGAAACAACATTACAAGCATTAGAAGCTGCAGAGAGAATCGTAATACCAGGAGGACTTATTAGCGTAGTCGTATATGTCGGGCACCCCGGTGGAAGGGAAGAATTGGAGACTGTTGAGACTTTTGCTGCTAGAATTACACACTACAACTATAATAATTCTTACCCTTCTCAAACTCTTCAAACTATCGACGACAATAACTCAGAAACCATCACTTTCCAACGTCATGAACAAGAACAACAACTGTTTGAACTTTCGCAACAAAACTACGACTTTTCGTCTTCTTTTCTAGATGAAACCTTGTTTTTTCCGAGTCCTTATTTTTACTCCAACGAGACTTATCCTTGTGAAGATCAACTAATCATTGACTCCACTTTCTCTTGTGATCAAAACGATGGTTTTGTTTCCATGAATGAGATTTTCCCAAATGATGAAAAATTCAATAACTACGTTCTTCCATGTGCGAAACGACAAAAGCTAGGTTATGAAGAAACAAACCAACAGCAGCAACAACATCAGCAACAACAGCAACATGAACAAGAGCTTTTTTACTCAGCCAATTTTTGTGTGGATGAGTTTATGACTAACCCTTTTACTTCTTTCGAAGTGGAACCGCATTCCGCTTCGAATATGGTTGATGTTGTGCAATGTGAGAAGAAGGTTAGCGAAAGGAGTATCTCGACGCAGAGTATTGCGGCGAGAGAAAGAAGAAGGAAGATATCTGAGAAGACACAGGAGCTTGGGAAGTTGGTTCCTGGTGGACCTAAGATGAACACTGCTGAGATGCTTAATGCTGCTGCTAATTATGTTAGGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGAAACTTTTAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTAGTAGTTTCTCCTTTTGTTCAAGAGAAGTTGTATTCCGAAGAAAAGTGCTTTATTTCAAAAGAGATTGTCACAGCATTGACCAATCATGATGATGTTAGATCAAAACCTACAATCCTTAAGGGTCTTAAACAACTTGTTCGAAGGGAGATTGATCATGAGAATGAGAAGAAACCAAAACAAGAATAA 1716 0.3904 MLSFRYRFSSFATHAPFTHSSSRRLFFLLPPQTHTTLTNISTDHSLFCLKPIKQNNGFFSIANNIHSSSSSFSKDSPFSGLEDVFVSFLFGKKKATDVAHMVWKHVVQKGDTVIDATCGNGFDTLELLNLVADDSHNGYVYALDIQKDALDKTSLLLEESLNSYQKYVKLFNICHSKMEEVVQRNASVRLVAFNLGYLPGGDKEIITRSETTLQALEAAERIVIPGGLISVVVYVGHPGGREELETVETFAARITHYNYNNSYPSQTLQTIDDNNSETITFQRHEQEQQLFELSQQNYDFSSSFLDETLFFPSPYFYSNETYPCEDQLIIDSTFSCDQNDGFVSMNEIFPNDEKFNNYVLPCAKRQKLGYEETNQQQQQHQQQQQHEQELFYSANFCVDEFMTNPFTSFEVEPHSASNMVDVVQCEKKVSERSISTQSIAARERRRKISEKTQELGKLVPGGPKMNTAEMLNAAANYVRFLQAQVGMLQVMETFSKEEKEPPPSEDLHKLVVSPFVQEKLYSEEKCFISKEIVTALTNHDDVRSKPTILKGLKQLVRREIDHENEKKPKQE* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0317 571 Gene3D Vaccinia Virus protein VP39 92 280 IPR029063 -
Psa1g0317 571 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 35 259 IPR010719 -
Psa1g0317 571 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 255 IPR029063 -
Psa1g0317 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 492 IPR036638 GO:0046983
Psa1g0317 571 SMART finulus 438 487 IPR011598 GO:0046983
Psa1g0317 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 432 481 IPR011598 GO:0046983
Psa1g0317 571 CDD bHLH_AtbHLH_like 437 489 IPR045239 -
Psa1g0317 571 Pfam Putative rRNA methylase 140 262 IPR010719 -
Psa1g0317 571 Pfam Helix-loop-helix DNA-binding domain 438 482 IPR011598 GO:0046983
Psa1g0317 571 Gene3D - 431 500 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0317 Psa-Chr1 17457890 17462901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0317 336 560 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 39.574 4.71e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g0317 rRNA_methylase 5.1e-38 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0317 - - mtr:MTR_1g060700 387.497