Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0310 ATGCTGATCACTGCCTCACTCAGCGATATAAGATCCACCGTGGAATACATTACCGCAATGGATTTCTCTGCAATCGAGTTTAGACGAATGGTTGGCATGTGCCCTGAGATCCTGACCACGAAAGTCTCAGACATTATACCAGTCTTCACGTTCCTTCACCGCGACGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGCCGTCCTCGGTTGATCATCTGCAACGTTGATAAACAGCTCCGCCCAACCATGTACTTCCTCCAAAGCATCGGAATAAAAGATGTAAACAAGCACACCGACTTGCTATCGTGTAATGTCGAAGATAAGTTCATACCCCGAATCGAATACTTTGAGAACATCGGATTCTCTCGCCGCGACGTGACTTCGATGTTTCGCAGATTTCCTCAACTGTTTTGTTATAGTATTAAGAATAATTTCGAGCCGAAATACAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCACAATATTTCTCATTTAGCTTAGAGAATAGGATTGAGCCTAGACATAAAAGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTGTTATTAAAGACCAGTGAAGTGAAATTTCAGAATAGATTAGAAGCATTTGTAAATTCAACAACACCATTGAAAACATCTCCTTTGTGGTGTGCTGGTCGTGATATTGATAAAGTATAG 714 0.4118 MLITASLSDIRSTVEYITAMDFSAIEFRRMVGMCPEILTTKVSDIIPVFTFLHRDVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIKDVNKHTDLLSCNVEDKFIPRIEYFENIGFSRRDVTSMFRRFPQLFCYSIKNNFEPKYNYFVVEMGRDLKEVKEFPQYFSFSLENRIEPRHKRCVEMGVCFPLPLLLKTSEVKFQNRLEAFVNSTTPLKTSPLWCAGRDIDKV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0310 237 PANTHER CGI-12 PROTEIN-RELATED 4 221 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 SMART mt_12 64 95 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 SMART mt_12 96 125 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 SMART mt_12 163 194 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 SMART mt_12 28 59 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 PANTHER OS03G0360600 PROTEIN 4 221 - -
Psa1g0310 237 Pfam mTERF 98 209 IPR003690 GO:0003690|GO:0006355
Psa1g0310 237 Gene3D Transcription termination factor 3, mitochondrial 2 218 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0310 Psa-Chr1 17384741 17387551 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g0310 mTERF 4.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0310 K15032 - gmx:100804440 409.068