Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0308 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGTCCTGCTGAAGATCTTAAACTTATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCAGGTCTCCAACGATGTGGAAAAAGTTGTCGTTTAAGATGGATCAATTATCTTAGACCCGATTTAAAGAGAGGCAATTTTACTGTAGAGGAAGAGGAAACCATCATAAAACTACATGAAGCCTTTGGAAATAAGTGGTCAAAGATTGCATCATATATGCCTGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACACACATTTGAAGAAAAAACTTGTCATCAAAAATTCAGATTCAACCAGTGGAGATGAATCTAAATTAGAATCATCAATAACCTCACCCTCTTCGTCAGAATCAATTTTATCGAACGAGGTACCAATAAAAGACTCCGAAAAACAAGTTTCCAACAATGAACTTGTTATCGTCAATGAGGATCCAAAAGGGTCATCAAATTCGTTGTCATATTCAATAGAGTCGAACAAAATCTTGAACTCAGCCGAAATTGTTGACAACAAAATAGAACAACAACATTTGAGTTCTCTAGAGTCTTATGATATTGACAAAATATTAGAAGATATGGAAAATCTAGACAGTTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATCGATAATATTGGATCAAATGATCAATCAAATGTTGGTGAAGAGAGTGTTATTCAAGATGTTGTTGAGAATGAGTTTGGAGTAGTAGGTGAAATAAAGGAGTCAAAGAACAAAGAAGAGGTTCAACCAAAGAATTATGAAGTTGAGCAAGAAATTGACCCTCATGAGGCATTTGATTTCAATGATATCATAATGTCTGATTCTGAATTAGATTTTGGTAATATTCAATTGTGGTCCACTTTTTCTGAAAATAATAGTCCTAACGTTTAA 987 0.3435 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVEEEETIIKLHEAFGNKWSKIASYMPGRTDNEIKNVWNTHLKKKLVIKNSDSTSGDESKLESSITSPSSSESILSNEVPIKDSEKQVSNNELVIVNEDPKGSSNSLSYSIESNKILNSAEIVDNKIEQQHLSSLESYDIDKILEDMENLDSLIEIPWESDYDLWNFIDNIGSNDQSNVGEESVIQDVVENEFGVVGEIKESKNKEEVQPKNYEVEQEIDPHEAFDFNDIIMSDSELDFGNIQLWSTFSENNSPNV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0308 328 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Psa1g0308 328 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Psa1g0308 328 SMART sant 68 116 IPR001005 -
Psa1g0308 328 SMART sant 15 65 IPR001005 -
Psa1g0308 328 Gene3D - 70 140 - -
Psa1g0308 328 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Psa1g0308 328 PANTHER TRANSCRIPTION FACTOR MYB72 1 263 - -
Psa1g0308 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Psa1g0308 328 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Psa1g0308 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Psa1g0308 328 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Psa1g0308 328 CDD SANT 71 114 IPR001005 -
Psa1g0308 328 MobiDBLite consensus disorder prediction 129 154 - -
Psa1g0308 328 CDD SANT 18 63 IPR001005 -
Psa1g0308 328 Gene3D - 16 68 - -
Psa1g0308 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0308 Psa-Chr1 17360142 17362942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0308 1 255 MYB Transcription Factor Family AT1G79180 48.110 1.26e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g0308 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0308 K09422 - gmx:100805511 379.407