Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0297 ATGAAGGATGGTGGTAGAAAACAAGGTGTAATGACACCATGTGCTGCATGCAAGCTTCTTAGAAGAAGATGTGCTCATGATTGTGTGTTTGCTCCATATTTTCCAGCTGATGAACCTCACAAATTTGGAAGTGTTCATAAAGTTTTTGGAGCTAGCAATGTGAACAAAATGTTACAGGAATTACCAGAACATCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTACTTCAAACCCAATTAGCACAAGCACAAGCAGAGGTTGTTCATATGAAAATGCATCAATCTTCATCATCATCAGATCAACACCAAGCATCACCATCATCAGAAAATGTGTACCAATCAAGCAAATCCTTTTCTTCACAAACCAACAATATGGTGCAATCCTTGTGGTCATTCTAG 477 0.392 MKDGGRKQGVMTPCAACKLLRRRCAHDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAQAQAEVVHMKMHQSSSSSDQHQASPSSENVYQSSKSFSSQTNNMVQSLWSF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0297 158 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Psa1g0297 158 Coils Coil 92 112 - -
Psa1g0297 158 MobiDBLite consensus disorder prediction 117 144 - -
Psa1g0297 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 151 - -
Psa1g0297 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 151 - -
Psa1g0297 158 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0297 Psa-Chr1 16163268 16168768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0297 1 123 AS2 family AT1G31320 81.301 4.27e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa1g0297 LOB 5.8e-43 No_clan