Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0294 ATGGGTGTTAACGATGGTTTCAAGATGGATAATCAACATTTACAAGATGATGATGATGTTCCACTCCCTGGATTTAGATTCCATCCTACTGATCAAGAACTTGTTACTTTTTATCTTCAAAGAAAACTTGATAAGAAACCTATTTCCATTGATCTCATCAAACAAGTTGATATCTACAAATATGATCCTTGGGATCTTCCGAGATCTAGTGTACATGGAGCAGAAAAAGAAGGAAATGATTGCGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGCGCTGGCAAAGGCGCGAAAACTGATTGGATGATGCACGAGTTTCGTCTTCCGTCTAATATTACCACCAACGCAAATCTTGCTCATGCTAAGAATGATAATGATGTTTCTCTTGAAGCAGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTATCACAAAGGAAGCAACAAATGGCAGAGGTGAAACCGTTAGCTTACAAGAGCGCCAGAATGAGCAGCAATATGGAGTTCATGTTAAATCAACAAACATACATCAATTTTGGTCCAAGCCATGAAGATCATCATAATCAGGATAAACCAGTGTTACCAGTAAATAGTTATACAAGTAGTGGTCAAAGAAATCAATTTTATATGAGTCAGTTGACCTCTTCAGATGCACAGCAACCTCAACAAATTTTAATACCATCTTCAAACTTTTGGATTCAGCAAGCTGCAAATGAGCTATTATCATTTGATAATTGGGATGAGCTTGGGTCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 798 0.3672 MGVNDGFKMDNQHLQDDDDVPLPGFRFHPTDQELVTFYLQRKLDKKPISIDLIKQVDIYKYDPWDLPRSSVHGAEKEGNDCVGLKKTLVYYRGSAGKGAKTDWMMHEFRLPSNITTNANLAHAKNDNDVSLEAEIWTLCRIFKRNVSQRKQQMAEVKPLAYKSARMSSNMEFMLNQQTYINFGPSHEDHHNQDKPVLPVNSYTSSGQRNQFYMSQLTSSDAQQPQQILIPSSNFWIQQAANELLSFDNWDELGSVVKFAVDSPSL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0294 265 ProSiteProfiles NAC domain profile. 1 144 IPR003441 GO:0003677|GO:0006355
Psa1g0294 265 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 74 - -
Psa1g0294 265 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 78 263 - -
Psa1g0294 265 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 11 74 - -
Psa1g0294 265 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 78 263 - -
Psa1g0294 265 Gene3D NAC domain 74 148 IPR036093 GO:0003677|GO:0006355
Psa1g0294 265 Gene3D NAC domain 30 73 IPR036093 GO:0003677|GO:0006355
Psa1g0294 265 Pfam No apical meristem (NAM) protein 23 71 IPR003441 GO:0003677|GO:0006355
Psa1g0294 265 Pfam No apical meristem (NAM) protein 79 110 IPR003441 GO:0003677|GO:0006355
Psa1g0294 265 SUPERFAMILY NAC domain 19 144 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0294 Psa-Chr1 15975206 15976483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0294 10 158 NAC Transcription Factor Family AT5G39820 43.284 1.31e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0294 NAM 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0294 - - gmx:100790471 316.235