Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0293 ATGAATAATCACTATTTACAAGTTGGTGATGATGATGATGATGATGATGTTCCACTTCCTGGATTCAGATTCCATCCTACTGATCAAGAACTTGTTACCTTTTATCTTCAAAGAAAACTTGATAAGAAACCTATTTCCATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCTAGTGTACATGGAGCAGAAAAAGAAGGAAATGATTGCGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGCGCTGGCAAAGGCGCGAAAACTGATTGGATGATGCACGAGTTTCGTCTTCCGTCTAGTATTGCTACCAGCGCAAATCTTGATCATGCTAAGAATGATAATGATGTTTCTCATGAAGCAGAAATTTGGACATTATGTAGAATTTTCAAAAGAAATGTACCACCGAGGAAACAGCAAATACCAGAGGTGAAACCATTAGCGAACAAGCGTGAGATCGTTCATGAAAAGAGTAGTAGAATGAACGATATGGAGTTCGGCGCAAATCAACAAACATACATAAATTTCGGTGCAAGCCACGAGCATCGGCGTGTTAATGAAAATCAACACATGGATAACTATGGAAGAATTGATCAAATGAATGAGTTTCATGTAGATCAGATGAGTTCTTCAGTGGCACATCAACCTCAACAACATAATGTAGCACAGTCTTCAAATTATTGGATTAATCAGGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTTCGGTTGATTCGCCTAGTTTGTAA 804 0.3719 MNNHYLQVGDDDDDDDVPLPGFRFHPTDQELVTFYLQRKLDKKPISIDLIKQIDIYKYDPWDLPKSSVHGAEKEGNDCVGLKKTLVYYRGSAGKGAKTDWMMHEFRLPSSIATSANLDHAKNDNDVSHEAEIWTLCRIFKRNVPPRKQQIPEVKPLANKREIVHEKSSRMNDMEFGANQQTYINFGASHEHRRVNENQHMDNYGRIDQMNEFHVDQMSSSVAHQPQQHNVAQSSNYWINQAANELLSFDNWDELGSVVKFSVDSPSL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0293 267 Pfam No apical meristem (NAM) protein 20 68 IPR003441 GO:0003677|GO:0006355
Psa1g0293 267 Pfam No apical meristem (NAM) protein 75 107 IPR003441 GO:0003677|GO:0006355
Psa1g0293 267 ProSiteProfiles NAC domain profile. 1 141 IPR003441 GO:0003677|GO:0006355
Psa1g0293 267 Gene3D NAC domain 72 143 IPR036093 GO:0003677|GO:0006355
Psa1g0293 267 Gene3D NAC domain 27 71 IPR036093 GO:0003677|GO:0006355
Psa1g0293 267 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 75 263 - -
Psa1g0293 267 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 10 71 - -
Psa1g0293 267 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 71 - -
Psa1g0293 267 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 75 263 - -
Psa1g0293 267 SUPERFAMILY NAC domain 19 141 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0293 Psa-Chr1 15781746 15783025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0293 15 152 NAC Transcription Factor Family AT5G39820 45.213 8.07e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0293 NAM 3.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0293 - - gmx:100790471 313.538