Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0290 ATGGTGAAGTTTACAGCTGATGAGTTGCGCCGCATTATGGACTACAAACATAACATCAGGAATATGTCTGTCATTGCTCATGTTGATCACGGAAAATCAACTTTGACAGATTCCCTTGTTGCTGCTGCTGGAATTATAGCACAAGAGGTTGCTGGAGATGTCAGGATGACAGATACCCGTGCAGATGAAGCTGAGCGTGGTATCACTATTAAGTCTACTGGTATCTCTCTATACTATGAGATGACTGATGATTCTCTCAAGAGTTTTAAGGGGGAGCGCAACGGGAATGAGTATCTCATTAATCTCATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTCACTGCTGCGCTTCGTATTACTGATGGAGCATTAGTGGTGGTGGATTGTGTTGAGGGAGTTTGTGTTCAAACTGAAACTGTGCTGCGACAGGCTCTTGGAGAAAGGATCAGGCCTGTTCTTACTGTTAATAAGATGGACAGGTGCTTTCTTGAGCTCCAAGTTGATGGAGAGGAGGCATATCAGACCTTTTCAAAGGTTATTGAGAATGCCAATGTCATTATGGGCTACCTATGA 579 0.4421 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDSLKSFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSKVIENANVIMGYL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0290 192 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 192 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 190 - -
Psa1g0290 192 Pfam Elongation factor Tu GTP binding domain 17 181 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PANTHER OS01G0742200 PROTEIN 1 190 - -
Psa1g0290 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 189 IPR027417 -
Psa1g0290 192 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Psa1g0290 192 Gene3D - 3 192 IPR027417 -
Psa1g0290 192 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Psa1g0290 192 TIGRFAM small_GTP: small GTP-binding protein domain 19 170 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0290 Psa-Chr1 15724161 15726317 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0290 1 189 Eukaryotic Initiation Factors Gene Family AT1G56070 96.825 3.17e-128 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0290 K03234 - fve:101310585 360.147