Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0282 ATGGTGAAGTTTACAGCTGATGAGTTACGTCGTATTATGGACTACAAGCACAACATCAGGAACATGTCTGTCATTGCTCACGTTGATCACGGAAAATCAACTCTGACAGATTCCCTTGTTGCTGCTGCTGGAATTATTGCACAAGAGGTTGCTGGAGATGTCAGGATGACAGATACCCGTGCAGATGAAGCTGAGCGTGGTATCACTATTAAGTCTACTGGTATCTCTCTGTACTATGAGATGACTGATGATTCTCTCAAGAGTTTTAAGGGGGAGCGCAATGGGAATGAGTATCTCATTAATCTTATTGATTCCCCTGGGCACGTTGATTTCTCATCTGAGGTTACTGCTGCACTTCGTATTACTGATGGAGCACTAGTGGTGGTGGATTGTGTTGAGGGAGTTTGTGTACAAACTGAAACTGTGCTGCGACAGGCTCTTGGAGAAAGGATCAGGCCTGTTCTTACTGTTAATAAGATGGACAGGTGCTTTCTTGAGCTCCAAGTTGATGGAGAGGAGGCATATCAGACCTTTTCAAGGGTTATTGAGAATGCCAATGTCATTATGGCTACCTATGAAGATCCACTTCTTGGTGATGTTCAGGTCTATCCTGAGAAAGGAACAGTTGCTTTCTCTGCTGGTCTGCATGGTTGGGCTTTTACTTTGACCAACTTTGCTAAGATGTATGCCTCTAAGTTTGGTGTTGATGAATCCAAAATGATGGAAAGACTTTGGGGTGAAAATTTCTTTGATCCTGCTACTAAGAAATGGACCACCAAGAATACAGGTTCAGCCACTTGCAAGCGTGGGTTTGTACAGTTCTGTTACGAGCCTATCAAGCAGATTATTAACACATGTATGAATGATCAGAAGGATAAGTTGTGGCCTATGTTGACCAAGCTTGGGGTCACCATGAAGTCTGAGGAAAAGGACCTTATGGGTAAGCCATTGATGAAGCGTGTCATGCAGACCTGGCTCCCAGCAAGCACTGCACTACTTGAAATGATGATCTTTCATCTTCCCTCTCCACATACGGCTCAGAGGTATCGTGTTGAGAATTTGTATGAAGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAATTGTGATCCTGATGGTCCTCTCATGCTTTATGTGTCGAAGATGATTCCAGCATCTGATAAAGGAAGGTTTTTTGCTTTTGGCCGTGTCTTTGCTGGTAAAGTTTCAACAGGTTTGAAGGTCAGAATTATGGGACCAAATTTTGTACCTGGGGAGAAGAAAGATTTGTATGTGAAGAGTGTTCAGAGAACTGTCATTTGGATGGGAAAGAGGCAGGAGACTGTTGAAGATGTTCCTTGTGGTAACACAGTTGCTTTGGTTGGTTTGGATCAATTTATCACCAAGAATGC 1394 0.4326 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDSLKSFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLTKLGVTMKSEEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPHTAQRYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGLKVRIMGPNFVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0282 464 Gene3D - 3 237 IPR027417 -
Psa1g0282 464 CDD EF2_II 375 464 - -
Psa1g0282 464 SUPERFAMILY Translation proteins 342 463 IPR009000 -
Psa1g0282 464 Pfam Elongation factor Tu GTP binding domain 17 342 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 TIGRFAM small_GTP: small GTP-binding protein domain 20 176 IPR005225 GO:0005525
Psa1g0282 464 Pfam Elongation factor Tu domain 2 394 460 IPR004161 GO:0005525
Psa1g0282 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Psa1g0282 464 Gene3D Translation factors 343 464 - -
Psa1g0282 464 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 464 - -
Psa1g0282 464 CDD EF2 20 230 - -
Psa1g0282 464 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Psa1g0282 464 PANTHER - 1 464 - -
Psa1g0282 464 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0282 Psa-Chr1 15249913 15252305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0282 1 464 Eukaryotic Initiation Factors Gene Family AT1G56070 95.043 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0282 K03234 - qsu:112038254 896.73