Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0276 ATGGAACCTCGGAAGGAGGAATTCCATTCTGCACCGCAACCGGTCCTGCAGGACCATCTGGACGGCATGCATGCCAATACAAGGCCTCCTCCTTCCTTTAACGTGTCGGAAAATAAACCTGTACATAATTTCTCCATACAGACTGGTGAGGAATTCGCTCTCGAGTTCATGAGGGACAGGGTGAATGTGAATCTCAAGAAGCCTTCATTTCCAAATGTTGTCGGTGATCCTAATTACTCGACAGGGTATATGGAATTCAAAGGCATTTTAGGCCATAAAGGATCTGAGAGTGGTTCCGATATTGAAAAAGGTCCGAAAGAGTTTGACAGAAGGAATTCTGCTCTACATCAGGAAAGAAGTAATTATGGCTCGGCTCGATCAATTCCTAGAACTTCGTCAAATCAAGATAGCAACCGGGTCCTTCACGGTATTTCTTCTTCTGGATCTTCTAACAGCTTATCAACGATGGCTCGGCTCGATCAATTCCTAGAACTTCGTCAAATCAAGATAGCAACCGGGTCCTTCACGCTCCCCGGAGAAGATCTCGATGCCCTAGTTTCAGTAACGTCTGATGAGGATCTGCGGAATATGATGGAGGAATGTCATGATCTACAAAGAAGGAGAGGATCGTTAAAGCTTCGGATGTTCCTGTTCTCTATATATGATTTGGATGATACTCAGTTTGGTCTAGGTAGCATGGATGGCGGTGATTCTGAAGTCCAGTATGTAGTGGCTATTAATGGCATGAACGTGGAATCAAGAAGCAACTCTATACTTCGTTGTGCCGGAAGTTCTAATGATATACAGGAATTAGACCGACAAACTATTGACAAGGAGACTAAAAGAGCTATGGTTGAATCGTATGGTGTCGGCAGTTCTTCCTTGACTGGAAATGTTAACCCAGTATTGACAATTCCGTCTTCGCAACCAATGCTACCAACATCCTCAAATGCTTATGAAGCATATCCATTCTTTTACGAGGATCCGATCGTTCAACAAGGGGGAACTAGTCAATATCCAATACATAATGCCCCCTTTCCTTCTAACAGTTCGGCTCGTAATCTAGTAGACACTCCGGTTTCTTTGCCTACTTTTGGTGTTGCGAGCCAAGGAATCGCGAGCCAAGGACAAGCATCCAGTGAGTTGCAAGTTCAAAGTTCTCTTCCTTCGCGTCCATTTGAGGGAAGTTTGCAAGGTAATTTATCGGAGGCGTCTGTTCCAGTTCCAGCTGCTGTATCAGAAACATTTCATCCTGCACTGCCATTAGACAACAAGATTTCGGCTGCTGAATCTGAAGTGCTGAATCCTACACAGATTTCAAGATCTGGTGAAGATGACTTCTATCCTGCATCCACAGATGCATTCAGTCGTGCTCTTGTTGATGCTGAGTCCAATATAATCGATTTCAGTTGCCTTGAACCACCTCCACTTCCTAATAGAGTATATTATTCGGAGAGAATTATTCCCAGGGAACATGCAGATTTGTTGAACAGGTCTGCAAAGTCAGACGATGCATATGGTTCGCACTTGCTCATGGCAGATTTACTTTCTGATTTGAACCGTATGAATTCAGTTAACGAATCCAGTGACATGTTTCACAATGAGAATCTGTCGAATTTGAACACGGTGTCCAACTCATCATCAGCAAAGCCCTTGCATACAGATGGCCATGCCATCAGCAACAAACATTTGCCTGATGCAGCAACTCAGGTGAACCCAAAGTTATATCAGCTTGCGGATTCTGATTTGAAGCCGGTATTGTCAGATAACAAAATTTCTGAAAATGAGACAAATACCTCAAAAGATAGCCATAAAATTCTCCCAGTTGATGAAACCAAGGGCACTGAAAGTCTTGCTTTTCGCCGGGTTCCTTCTGTTGAACATAATGAGAATCTAGCATCTAAAATTCAAGACCAAAATTTGTCTGAGGCTCCTACAAGGGAACCTCTTGATGCTAAATCCAAACCTTCTCAGGGTGACATTCTGATTGATATCGAAGACAGGTTTCCCCGTGATTTCCTTTACGATATGTTCTCGAAAGCAATTCATTCTGAGGATTCCGCAAACATTAGTCCATTGCCAGCCGATAGAGCAGGTTTGAGCTTGAAAATGGACAATCACGAGCCTAAAAGTTGGTCATATTTTCAGAAGTTGGCACATGAAGGGTTTGATAATGTTTCTCTAATTGATCAGGATAATCTCGGGTATTCATCAGCTGTAAGCAAAGTAAAAGAAGGAGATAGTAAGTTCAATATTTCCGCTCCTCCACCAGCAGACGTTATTGTTTTGACAGGACCCAAGGAATCCCATTCCAACATTAATTTTGGAGAGGAAAATCAGAAAATCTTACCTGTAAGTAGTACTAAACCCGAGGCTATTGTTTTTCAACCAGAAAACAACCATTCTGAACTTAAGGCCAATGAAAATAAGAACATGAACGCCGCCCCCGTGGAAAACGTTAGGCCACAGGAGTCTGAATATCAAGATGGCAATAATGAGACAAGGGATGTGGTTGTAGCTCCTCAAGAGATTAGTTTTGATGAGTTTGACATTAGTACTTTGCAGATCATAATGAATGCGGATCTTGAAGAGCTGAGAGAACTTGGTTCTGGCACTTTTGGGACTGTGTATCATGGAAAATGGAGAGGATCAGATGTTGCAATTAAAAGAATAAAGAAGAGTTGTTTCTCTGGTCGGTCTTCAGAACAAGAAAGACTGACGATAGAGTTCTGGCGGGAAGCTGACATACTTTCTAAGCTTCATCATCCAAATGTGGTGGCTTTTTATGGCGTAGTTCAAGATGGACCAGGAGGAACAATGGCGACTGTTACGGAGTTCATGGTGGACGGTTCTCTACGACATGTTTTGCTACGAAAGGATAGGTACCTTGATCGTCGCAAGAGGCTAATAATTGCCATGGATGCAGCATTTGGAATGGAGTATTTACATGCAAAAAACATTGTTCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATTTGCAAGGTTGGCGATTTCGGCCTGTCAAAAATCAAGCGGAATACCTTAGTGACTGGTGGTGTGCGTGGAACACTACCGTGGATGGCACCAGAGCTGCTGAATGGGAGCAGCAATAAGGTTTCAGAAAAGGTTGATGTATTCTCCTTTGGGATTGTATTATGGGAGATTCTTACCGGTGAGGAACCATATGCTAATATGCACTATGGTGCAATCATAGGAGGTATTGTGAACAACACACTAAGACCTACCATCCCAAGTTTTTGTGATCTAGAATGGAGAACACTAATGGAGCAGTGTTGGGCACCTAACCCTGCAGTCAGGCCATCATTTACAGAAATTGCGCGCCGCTTGCGTGTGATGTCTGCAGCTTCTAGTCAGACCAAAGGACAAGGACACAAAGCATCTAAATGA 3435 0.43 MEPRKEEFHSAPQPVLQDHLDGMHANTRPPPSFNVSENKPVHNFSIQTGEEFALEFMRDRVNVNLKKPSFPNVVGDPNYSTGYMEFKGILGHKGSESGSDIEKGPKEFDRRNSALHQERSNYGSARSIPRTSSNQDSNRVLHGISSSGSSNSLSTMARLDQFLELRQIKIATGSFTLPGEDLDALVSVTSDEDLRNMMEECHDLQRRRGSLKLRMFLFSIYDLDDTQFGLGSMDGGDSEVQYVVAINGMNVESRSNSILRCAGSSNDIQELDRQTIDKETKRAMVESYGVGSSSLTGNVNPVLTIPSSQPMLPTSSNAYEAYPFFYEDPIVQQGGTSQYPIHNAPFPSNSSARNLVDTPVSLPTFGVASQGIASQGQASSELQVQSSLPSRPFEGSLQGNLSEASVPVPAAVSETFHPALPLDNKISAAESEVLNPTQISRSGEDDFYPASTDAFSRALVDAESNIIDFSCLEPPPLPNRVYYSERIIPREHADLLNRSAKSDDAYGSHLLMADLLSDLNRMNSVNESSDMFHNENLSNLNTVSNSSSAKPLHTDGHAISNKHLPDAATQVNPKLYQLADSDLKPVLSDNKISENETNTSKDSHKILPVDETKGTESLAFRRVPSVEHNENLASKIQDQNLSEAPTREPLDAKSKPSQGDILIDIEDRFPRDFLYDMFSKAIHSEDSANISPLPADRAGLSLKMDNHEPKSWSYFQKLAHEGFDNVSLIDQDNLGYSSAVSKVKEGDSKFNISAPPPADVIVLTGPKESHSNINFGEENQKILPVSSTKPEAIVFQPENNHSELKANENKNMNAAPVENVRPQESEYQDGNNETRDVVVAPQEISFDEFDISTLQIIMNADLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFSGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSFCDLEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAASSQTKGQGHKASK* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0276 1144 Coils Coil 194 214 - -
Psa1g0276 1144 PANTHER SERINE-THREONINE PROTEIN KINASE 73 155 - -
Psa1g0276 1144 PANTHER SERINE-THREONINE PROTEIN KINASE 433 1144 - -
Psa1g0276 1144 PANTHER SERINE-THREONINE PROTEIN KINASE 174 270 - -
Psa1g0276 1144 CDD STKc_MAP3K-like 868 1125 - -
Psa1g0276 1144 MobiDBLite consensus disorder prediction 595 610 - -
Psa1g0276 1144 SUPERFAMILY Protein kinase-like (PK-like) 852 1124 IPR011009 -
Psa1g0276 1144 MobiDBLite consensus disorder prediction 624 658 - -
Psa1g0276 1144 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g0276 1144 PRINTS Tyrosine kinase catalytic domain signature 944 957 IPR001245 GO:0004672|GO:0006468
Psa1g0276 1144 PRINTS Tyrosine kinase catalytic domain signature 981 999 IPR001245 GO:0004672|GO:0006468
Psa1g0276 1144 PRINTS Tyrosine kinase catalytic domain signature 1052 1074 IPR001245 GO:0004672|GO:0006468
Psa1g0276 1144 PRINTS Tyrosine kinase catalytic domain signature 1096 1118 IPR001245 GO:0004672|GO:0006468
Psa1g0276 1144 Pfam Protein tyrosine and serine/threonine kinase 863 1125 IPR001245 GO:0004672|GO:0006468
Psa1g0276 1144 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 433 1144 - -
Psa1g0276 1144 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 174 270 - -
Psa1g0276 1144 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 73 155 - -
Psa1g0276 1144 SMART serkin_6 862 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0276 1144 Pfam PB1 domain 173 218 IPR000270 GO:0005515
Psa1g0276 1144 SUPERFAMILY CAD & PB1 domains 169 220 - -
Psa1g0276 1144 MobiDBLite consensus disorder prediction 111 137 - -
Psa1g0276 1144 ProSiteProfiles Protein kinase domain profile. 862 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0276 1144 MobiDBLite consensus disorder prediction 589 610 - -
Psa1g0276 1144 ProSitePatterns Protein kinases ATP-binding region signature. 868 893 IPR017441 GO:0005524
Psa1g0276 1144 MobiDBLite consensus disorder prediction 630 644 - -
Psa1g0276 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 987 999 IPR008271 GO:0004672|GO:0006468
Psa1g0276 1144 Gene3D Phosphorylase Kinase; domain 1 856 949 - -
Psa1g0276 1144 SMART PB1_new 129 218 IPR000270 GO:0005515
Psa1g0276 1144 MobiDBLite consensus disorder prediction 117 137 - -
Psa1g0276 1144 Gene3D Transferase(Phosphotransferase) domain 1 950 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0276 Psa-Chr1 14887527 14892120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0276 438 547 MAP Kinase Kinase Kinase AT1G16270 39.091 9.18e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Psa1g0276 PK_Tyr_Ser-Thr 1.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0276 - - cam:101510527 1751.49