Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0269 ATGGATGAATCACAACACATAGTAGACCAAAACTTCCCACTCTTCAAACCATCTCTCAAACCCTCCATAAACCATTCACCCGCCGCCACAATTATCCCTCAAAACGACGTCGTTACCCATGAAAACCCTAACTCCATCACCGAAAACACCGCCACTTTCTCCGAGCTCGGCTTATCGGAATGGGCGGTGAAGACTTGCAAGGAGCTCCGAATGCGAACTCCACGCCGCGTGCAGCAGTACTGCATCCCGAAGATTCTAGAAGGCCGTCACGTGATTGGAATCGACGAGACCGGCAGTGGTAAAACAGCTGCGTTTGCGCTTCCTATACTCCAGCGCCTAGCTGAACATCCGTTTGGTGTGTTTGCACTCGTGGTGACGCCCACTCGCGAGCTTGCGTTTCAGCTGGCCGAGCAGTTTCGGGCTCTTGGATCCTCACTCCGCCTCCGTGTTGCGGTGATTGTCGGTGGTATGGATATGCTTAGACAGACTAAAGAGTTGGTCGCCAGGCCTCACCTTGTTATAGCTACTCCCGGAAGAATCAAAGTCTTGCTCAAGGATAATCCTGAAATCGCTCCTGTTTTCTCCCGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGGGTCCTGGATGTTGGGTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAACCGGCAAAACCTATTCTTTTCTGCAACCACAACTAGTAATTTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGCTGTATGCCTTTGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAGCTTACCCAACAAGCTGTATTCATCCCTAAAAATGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGAATTCGGTCTGCCATTGTCTTTGTCTCCACTTGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTACTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTGGAAGCACTTCATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCCGGCCGCGGTTTGGATATTCCTACAGTTGACCTTGTTATTAATTATGATGTTCCAAGGATTCCACGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTTGCTCTGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATTAAAAGGCAACTTGATATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAAAATGTCGCAAAAATGAAGATGATAGATGATGGCTTTGAAGAGAAAGCAAATGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAAAAAGGATTATTAAAGCAAAGTAAGAGAAAAAGAAATAAAGAATTTTCAAAGAAAGGAAATAAACATGAAAAAGTGGAAGTGGATGCATCAGCTGATATAGTCTCACTAAAGAAAAGGAGTAAGAGATAG 1533 0.4344 MDESQHIVDQNFPLFKPSLKPSINHSPAATIIPQNDVVTHENPNSITENTATFSELGLSEWAVKTCKELRMRTPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLRLRVAVIVGGMDMLRQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFSRTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQAVFIPKNVKDVYLLHILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRIPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIKRQLDMIEYKENEVLSLMKKVFSAKNVAKMKMIDDGFEEKANERKKQKLKMLEEKGLLKQSKRKRNKEFSKKGNKHEKVEVDASADIVSLKKRSKR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0269 510 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 49 480 - -
Psa1g0269 510 CDD SF2_C_DEAD 267 399 - -
Psa1g0269 510 Gene3D - 24 254 IPR027417 -
Psa1g0269 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Psa1g0269 510 Gene3D - 262 506 IPR027417 -
Psa1g0269 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Psa1g0269 510 Pfam DEAD/DEAH box helicase 76 244 IPR011545 GO:0003676|GO:0005524
Psa1g0269 510 Pfam Helicase conserved C-terminal domain 293 390 IPR001650 -
Psa1g0269 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 429 IPR001650 -
Psa1g0269 510 MobiDBLite consensus disorder prediction 462 477 - -
Psa1g0269 510 MobiDBLite consensus disorder prediction 462 494 - -
Psa1g0269 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 410 IPR027417 -
Psa1g0269 510 SMART ultradead3 70 270 IPR014001 -
Psa1g0269 510 SMART helicmild6 309 390 IPR001650 -
Psa1g0269 510 PANTHER RNA HELICASE 49 480 - -
Psa1g0269 510 CDD DEADc_DDX49 53 256 - -
Psa1g0269 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0269 Psa-Chr1 14778761 14783097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0269 35 419 Eukaryotic Initiation Factors Gene Family AT3G19760 29.457 1.61e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0269 K14778 - gmx:100798597 744.962