Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0261 ATGATAAAAGATTATATGTTTATTGGATTCAATTGTACATGTTTGGCCCATAAATTCCCCACGAATAACCCGAAACCCATAAAAAAAACCCAACACCCACAAACACCTATTCACTTTCTGCTGTTCCTAAACGCTAGCAAAAAAAAACCTAGCCACCTCCAAGAACCTCAAAACCACATACACAACAATCATCAATCGAGGTTCGCTTTCGAAGAGGCTCTTGTCGTGTCTGTAACCTTAAACAACAAACCTCTCTTCTTTCGTCTTTCTTCTTGCATCAGATTTGCTCACTGTAGCTTCTCTACTCATCCACTAATTGCAGCCAAAATGTCGCGGAAGGGGTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACAAAACTGCATCCACTTTCTCCTGAAGTCATATCTCGCCAGGCTACTATCAATATTGGCACCATAGGTCATGTGGCACATGGAAAGTCGACTGTTGTGAAAGCAATATCAGGTGTTCAGACTGTGCGTTTTAAAAATGAGTTGGAACGTAACATTACAATCAAGCTTGGTTATGCAAATGCAAAAATATACAAGTGTGAAGATGAGCGGTGTCCAAGGCCTATGTCCTACAAGGCTTATGGAAGTGGAAAGGAAGATAATCCTTTGTGTGACGTACTAGGGTTTGAAAATTCCAAGATGAAATTGCTGAGACATGTTTCTTTTGTTGATTGCCCAGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATCATGGACGGTGCTTTGCTACTCATTGCTGCTAATGAAAGCTGCCCGCAACCACAAACTTCTGAGCATTTAGCTGCCGTGGAAATTATGCGTCTACAGCACATAATTATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTGGCAATCAACCAGCATGAAGCAATTCAGAAGTTTATTCAAGGAACTGTTGCTGATAGTGCACCAGTAGTACCTATTTCAGCACAATTGAAGTATAATATTGATGTTGTGTGTGAGTACATTGTGAAAAAGATCCCTATCCCTGAACGGAATTTCATTTCTCCACCTAATATGATAGTAATTCGGTCATTTGATGTCAATAAACCCGGTTATGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTAAGGGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATAGTTGTTAAAGACGAGAGTGGAAACATCCGATGCACACCTATCTACTCGAGAATAGTTTCATTATATGCTGAACAAAATGAGCTTCAGTTTGCAGTTCCTGGAGGCCTTATTGGTGTTGGAACAACAATGGACCCCACCTTGACTCGTGCTGACAGGTTGGTAGGGCAAGTTCTTGGAGAGGTTGGATCACTGCCCGAGGTTTTTGTGGAACTTGAGGTAAACTTTTTCTTGCTTCGACGGCTTCTTGGTGTCCGGACAAAAGGTTCGGAGAGACAAGGAAAAGTCGCAAAACTGGCGAAAGGAGAGATGCTTATGTTGAACATAGGATCAATGTCAACAGGTGCCAGAGTGGTTGCTGTGAAGAATGACTTGGCGAAATTGCAACTTACTTCCCCTGTGTGCACCAGCAAGGGTGAGAAGATTGCTCTAAGTAGACGTGTCGAGAAGCATTGGCGTCTTATCGGCTGGGGCCAAATCCAAGCTGGAATCACCCTTGAAGTCCCTCCTGCACCCATTCTGAGTTGA 1728 0.4253 MIKDYMFIGFNCTCLAHKFPTNNPKPIKKTQHPQTPIHFLLFLNASKKKPSHLQEPQNHIHNNHQSRFAFEEALVVSVTLNNKPLFFRLSSCIRFAHCSFSTHPLIAAKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMSYKAYGSGKEDNPLCDVLGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADSAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVAKLAKGEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLEVPPAPILS* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0261 575 CDD eIF2_gamma_II 350 463 IPR044127 GO:0000049
Psa1g0261 575 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 464 561 IPR009001 -
Psa1g0261 575 Pfam Elongation factor Tu domain 2 377 459 IPR004161 GO:0005525
Psa1g0261 575 CDD eIF2_gamma_III 466 560 IPR015256 -
Psa1g0261 575 Pfam Initiation factor eIF2 gamma, C terminal 471 560 IPR015256 -
Psa1g0261 575 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 139 348 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 351 IPR027417 -
Psa1g0261 575 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 110 572 - -
Psa1g0261 575 Pfam Elongation factor Tu GTP binding domain 141 345 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 Gene3D Translation factors 466 564 - -
Psa1g0261 575 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 110 572 - -
Psa1g0261 575 PRINTS GTP-binding elongation factor signature 143 156 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 PRINTS GTP-binding elongation factor signature 232 242 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 PRINTS GTP-binding elongation factor signature 248 259 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 PRINTS GTP-binding elongation factor signature 286 295 IPR000795 GO:0003924|GO:0005525
Psa1g0261 575 SUPERFAMILY Translation proteins 349 463 IPR009000 -
Psa1g0261 575 Gene3D Translation factors 352 465 - -
Psa1g0261 575 CDD eIF2_gamma 142 349 IPR044128 GO:0005525
Psa1g0261 575 Gene3D - 139 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0261 Psa-Chr1 14352729 14356954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0261 110 572 Eukaryotic Initiation Factors Gene Family AT1G04170 91.164 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0261 K03242 - gmx:100784099 899.042