Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0257 ATGGCGAAACCTGGGAGAGGTCGTCGCTCACCACCGTCGGGTTCCGTCTCCGGATCTTCCTCTCTCTCATCCTCTTCTCGTTCCTCTTCTCGCTCTCGTTCTCGCTCCAGATCCTTCTCTTCCTCCTCCTCCCGCAGTTCCAAGAGCCGCAGCCGGAGTCCTCCTCCTCAGAGAAGGAAAAGTTCCACTGAACCAGCTAGGCGAGGTCGATCTCCTGCTCTTCCTCCCCCTCCTCAGTCTAAGAAAGCTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGCGAGTCTCTTGTACTGCACGTTGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATCTTCAGTAATTTTGGTGAGGTTGTAAGTGTGGAGTTGGTGATGGATAGAGCTGTTAATCTTCCAAAAGGATATGGGTATGTGCATTTCAAGACAAGAGGAGAAGCTGAAAAAGCATTAAATTTCATGGATGGTGCCCAAATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGGCACAAAGTTTCACCACCTCCAAAAGCTTCTGCTCTTGCTCCAAAGAGAGATGCACCTAGGACTGACAATGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCCAAGAGAATCTGGATCTCCAAGACGACCAGAATCTCCTCGACGCCGTGCAGATTCTCCTGTCCGTCGTCGATTAGATTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCTGTGTCTCCTGGTAGAGGTCGTTCTCCATCTCCCCCACCTAGGCGCTTGAGATCCCCTGCAAGAGTCTCACCTCGAAGAGTGCGTGGAAGCCCAGGCCCAGGTCGGAGACGTACTCCTCCTCCACCTCCAAGACGCCGTTCACCTCCCAGAAGAGCTCGTAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGTCGCTCTCCAATACGTAGATCTGCACGCTCTCGCTCAAGATCGTTCTCACCTCGCCGAGGTCGGCCACCTGTGAGACGGGGAAGATCATCATCTTACTCTGATTCACCAAGTCCTCGTAAGGTATCCCGGAGATCAAAGAGTCGAAGTCCAAGAAGGCCTTTGAAAGGAAGAGCTAGTAGCAACAGTAGCAGCAGCAGCTCACCACCTCCAGCCCGCAAGCCATAG 1185 0.5224 MAKPGRGRRSPPSGSVSGSSSLSSSSRSSSRSRSRSRSFSSSSSRSSKSRSRSPPPQRRKSSTEPARRGRSPALPPPPQSKKASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALNFMDGAQIDGNVIKARFTLPPRHKVSPPPKASALAPKRDAPRTDNAGADVEKDGPKRPRESGSPRRPESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPRRVRGSPGPGRRRTPPPPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSSSPPPARKP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0257 394 MobiDBLite consensus disorder prediction 1 94 - -
Psa1g0257 394 MobiDBLite consensus disorder prediction 12 60 - -
Psa1g0257 394 SMART rrm1_1 98 171 IPR000504 GO:0003723
Psa1g0257 394 MobiDBLite consensus disorder prediction 70 92 - -
Psa1g0257 394 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 375 - -
Psa1g0257 394 MobiDBLite consensus disorder prediction 293 345 - -
Psa1g0257 394 MobiDBLite consensus disorder prediction 197 249 - -
Psa1g0257 394 MobiDBLite consensus disorder prediction 174 394 - -
Psa1g0257 394 CDD RRM_RNPS1 99 171 IPR034201 -
Psa1g0257 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Psa1g0257 394 Gene3D - 16 181 IPR012677 -
Psa1g0257 394 PANTHER BNAA09G56240D PROTEIN 1 375 - -
Psa1g0257 394 SUPERFAMILY RNA-binding domain, RBD 85 180 IPR035979 GO:0003676
Psa1g0257 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Psa1g0257 394 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0257 Psa-Chr1 14274852 14281767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0257 99 172 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 7.12e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0257 K14325 - gmx:100783566 251.136