Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0233 ATGACATTGGATTTAAGTTTCAACTCAAAAAATCTGTTTTTAAACTTTTATATGATTCTATTGTTTAGCCTTGGAATATTCCTTGTAAGTTCTGTCAATGAAGAGGTTTCAATTCTTTTGAAGTTCAAAACTTCTCTTTTAGACTCAAATGATAATCTTGTTAACTGGAATCCTTCTGATTTAACTCCATGCAATTGGACTGGTGTGTATTGTACTGATTCAATAGTAACTTCTGTTACACTTCACAACCTTAATCTCTCTGGTAATTTGTCTCCTACAATCTGTAACCTTCCATGGTTAATTGAGTTGAATGTGTCTAAAAACTTTATCTCTGGTCCAATTCCTGAAGCTTTTTTTGTTAACTGTGATAAACTCGAGGTTTTAGACCTTTGTACAAATAGGTTTCATGGACCATTTCTGACCCTTGTTTGGAAAATCAAAACACTTAGAAAGCTTTACCTTTGTGAAAACTATATGTATGGTGAAATTCCTGAAGATATTGGTGGACTAACATCACTTGAAGAGTTAGTGATTTATAGCAACAACTTAACAGGAAGCATTCCTGCGTCGATAAGTAAGTTGAAGAAGCTTAGAGTTATAAGAGCGGGTTTGAATGGTCTCTCAGGAAAATTACCTTCAGAAATCAGTGAATGTGAAAGCTTAGAGACATTAGGGTTAGCACAGAATCAGTTAATAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAATCTTACGAATTTGATTCTATGGCAAAACTCTTTCTCCGGTGAGCTTCCTCTTGAGATTGGAAACATTAGTAGCCTAGAATTAATCGCTTTGCATCAAAATTCATTGATTGGTGGTATCCCGAACGATATTGGAAGGCTATCGCGGTTGAAGAGATTGTACATGTACACAAACCAGTTGAATGGTACAATTTCAGCTGAGTTAGGAAATTGTACTAATGCTATTGAGATTGACCTATCTGAAAACCATTTGATTGGTATCATCCCAAAAGAGTTAGGTCAAATCTCTAATCTTAGCTTGCTTCACTTATTTGAAAACAATTTGCAAGGTCATATTCCAAAGGAGCTTGGAAATTTGAGGCTGCTGAGAAATTTAGATCTGTCGTTGAACAACTTAACAGGTATAATTCCATTGGAGTTTCAAAATCTGGAACTCATGGAAGATTTGCAGCTATTTGATAATCAACTTGAAGGTGTAATTCCACCTCATCTTGGAGCTGTTAGGAACCTTACTATTCTTGATATATCTTCAAATAATCTTGTCGGTATGATACCGATTCATCTTTGTGAATATCAGAAACTTCAATTCCTTAGCCTTGGATCAAATAGGCTCTTTGGTAATATTCCTTATAGCTTGAAAATCTGCAAGTCGCTTGTGCAGTTAATGCTAGGGGATAATCTTTTGACAGGAAGCTTACCTGTTGAATTGTATGAACTTCATAATCTTACTGCGCTCGAGCTTCATCAGAACCGATTCTCTGGACTAATTAGCCCTGGAATTGGTCAGGTTAAAAATTTAGAGAGGCTGCACTTGTCAGATAACTATTTTTCTGGTTATCTACCTTCTGAGATTGGAAATCTGACTCAACTTGTCACATTCAATGTTTCGTCGAATCATTTTGGTGGAAGTATTCCAGACGAGTTAGGAAACTGTGTGAGGTTGCAGAGGCTTGATCTTAGCAGGAACAAGTTTACTGGTATGCTTCCAAATTCAATTGGAAATCTTGTGAATTTGGAGCTACTAAAAATTTCTGATAATATGCTCTTTGGAGAAATACCAGGCGCTTTGGGAGACCTTATTCGGCTTACCGATTTGGAACTTGGCGGTAATCGGTTTTCAGGAAGGATCCCTTTTCCTTTTGGAAGACTTTCTGCTCTTCAGATAGCGCTTAACTTGAGTCACAACAATCTTTCTGATACAATTCCTGATAGCTTAGGGAGCTTGCAAATGCTAGAATCGCTTTACTTAAATGATAATCAACTTGTCGGGGAAATTCCTTCATCAATTGGTGACTTGCTTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTGATTGGAACTGTTCCAGACACGACAACATTTAGAAAGATGGATTTCACGAACTTTGCAGGGAACAATGGTTTGTGCCGTGTAGGTACTAATCACTGTCATCCATCTCTAGCTTCATCTCATTGTGAAAAGCCGACGAAAGACGGTTTGTCGAGGGAAAAGATAGTGAGCATTGTTTCTGGTGTGGTTGGTTTTGTTTCTCTTATTTTCATTGTTTGTATATGTTGGACTATGATGAAGCGCCGCCGCAGCGATTCCTTTGTTTCAATTGAAGAACAAACAAAGCCTCATGTTCTAGATGATAACTATTACTTTCCGAAAGAAGGCTTCACTTACAATGATCTCTTGGAAGCTACTGGAAATTTTTCAGAAGGTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAAAGCTATTATGGATGATGGTGAAGTTATTGCTGTCAAGAAGCTGAATGCACGTGGCGGAGAAGCAGGAAATGTCGAACGGAGCTTCATTGCCGAGATTTCAACTCTTGGAAAGATTAGGCACAGGAACATTGTAAAGCTGCATGGATTTTGTTTTCACGAGGATTCTAATCTTCTATTGTATGAATACATGGAAAATGGAAGCCTCGGAGAAAAACTTCATTCAAGTTCAAAAACATGTTCATTGGATTGGAATGTTAGATATAAAATAGCTCTAGGAGCAGCAGAAGGTTTATGCTATCTTCACTATGATTGTAAACCTCAAATCATTCATCGCGATATTAAGTCAAACAACATTTTGCTTGATCAAAGTTTTCAGGCCCATGTTGGAGACTTTGGATTGGCAAAATTGATTGATTTTTCATTCTCGAAATCTATGTCTTCTGTGGCTGGATCATATGGATACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAGAAATGTGACATATATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACTGGGAGGTCACCCGTTCAACCATTGGAACAAGGCGGTGATTTAGTGAATTGGGTGAGAAGATCAATTCAAGCATCCACACCTACATCTGAGTTATTTGACAAGAGATTGAATCTGGATGAACAAAGAACCATTGAAGAAATGTCTCTTATTCTAAAAATTGCACTGTTTTGCACAAGTACCTCTCCACTTAATAGGCCTACGATGCGAGAGGTTATTGCAATGTTGATCGATGCCAGGGAATATGTCAACCAATCACCAACCTCTCCTTCGTCTGAAACTCCACTTGATGAAGAAAAAAGTTCTTCTTCCAAAGATGATGGTGTCAAGTTGTGA 3357 0.3768 MTLDLSFNSKNLFLNFYMILLFSLGIFLVSSVNEEVSILLKFKTSLLDSNDNLVNWNPSDLTPCNWTGVYCTDSIVTSVTLHNLNLSGNLSPTICNLPWLIELNVSKNFISGPIPEAFFVNCDKLEVLDLCTNRFHGPFLTLVWKIKTLRKLYLCENYMYGEIPEDIGGLTSLEELVIYSNNLTGSIPASISKLKKLRVIRAGLNGLSGKLPSEISECESLETLGLAQNQLIGSIPKELQKLQNLTNLILWQNSFSGELPLEIGNISSLELIALHQNSLIGGIPNDIGRLSRLKRLYMYTNQLNGTISAELGNCTNAIEIDLSENHLIGIIPKELGQISNLSLLHLFENNLQGHIPKELGNLRLLRNLDLSLNNLTGIIPLEFQNLELMEDLQLFDNQLEGVIPPHLGAVRNLTILDISSNNLVGMIPIHLCEYQKLQFLSLGSNRLFGNIPYSLKICKSLVQLMLGDNLLTGSLPVELYELHNLTALELHQNRFSGLISPGIGQVKNLERLHLSDNYFSGYLPSEIGNLTQLVTFNVSSNHFGGSIPDELGNCVRLQRLDLSRNKFTGMLPNSIGNLVNLELLKISDNMLFGEIPGALGDLIRLTDLELGGNRFSGRIPFPFGRLSALQIALNLSHNNLSDTIPDSLGSLQMLESLYLNDNQLVGEIPSSIGDLLSLLVCNVSNNKLIGTVPDTTTFRKMDFTNFAGNNGLCRVGTNHCHPSLASSHCEKPTKDGLSREKIVSIVSGVVGFVSLIFIVCICWTMMKRRRSDSFVSIEEQTKPHVLDDNYYFPKEGFTYNDLLEATGNFSEGEVIGRGACGTVYKAIMDDGEVIAVKKLNARGGEAGNVERSFIAEISTLGKIRHRNIVKLHGFCFHEDSNLLLYEYMENGSLGEKLHSSSKTCSLDWNVRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQSFQAHVGDFGLAKLIDFSFSKSMSSVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVNWVRRSIQASTPTSELFDKRLNLDEQRTIEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVNQSPTSPSSETPLDEEKSSSSKDDGVKL* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0233 1118 SMART LRR_typ_2 651 675 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 170 194 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 290 314 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 578 602 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 410 434 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 530 554 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 482 506 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 362 385 IPR003591 -
Psa1g0233 1118 SMART LRR_typ_2 555 577 IPR003591 -
Psa1g0233 1118 ProSiteProfiles Protein kinase domain profile. 809 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0233 1118 SUPERFAMILY L domain-like 33 304 - -
Psa1g0233 1118 Pfam Protein kinase domain 810 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0233 1118 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Psa1g0233 1118 MobiDBLite consensus disorder prediction 1091 1118 - -
Psa1g0233 1118 PANTHER OS07G0152200 PROTEIN 19 1095 - -
Psa1g0233 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 933 945 IPR008271 GO:0004672|GO:0006468
Psa1g0233 1118 SUPERFAMILY Protein kinase-like (PK-like) 787 1083 IPR011009 -
Psa1g0233 1118 Gene3D Ribonuclease Inhibitor 34 144 IPR032675 -
Psa1g0233 1118 Gene3D Phosphorylase Kinase; domain 1 771 887 - -
Psa1g0233 1118 SUPERFAMILY RNI-like 319 696 - -
Psa1g0233 1118 Gene3D Ribonuclease Inhibitor 433 724 IPR032675 -
Psa1g0233 1118 Gene3D Ribonuclease Inhibitor 234 332 IPR032675 -
Psa1g0233 1118 Gene3D Ribonuclease Inhibitor 145 233 IPR032675 -
Psa1g0233 1118 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 1095 - -
Psa1g0233 1118 Pfam Leucine rich repeat 556 615 IPR001611 GO:0005515
Psa1g0233 1118 Gene3D Transferase(Phosphotransferase) domain 1 888 1106 - -
Psa1g0233 1118 ProSiteProfiles Leucine-rich repeat profile. 364 385 IPR001611 GO:0005515
Psa1g0233 1118 Gene3D Ribonuclease Inhibitor 333 432 IPR032675 -
Psa1g0233 1118 SMART serkin_6 809 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0233 Psa-Chr1 12915842 12921108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0233 57 1088 Receptor kinase-like Gene Family AT1G73080 38.162 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g0233 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0233 - - gmx:100818311 1774.99