Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0231 ATGTTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCACCAGTGACTTTAGGGAGTTTCATTGGTGCAAGTAGTTCACATTCTGTTGTTAGAAGAGTTTCTCTTTCTAGAGGGAATTGTGTTAAAGGAAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACCACTACTGATTTTGTTGCTGACCATGGGAATCCGGTTTCCCTTGATTCTTCTAACAATGGTGATACTGATAAAGGTGGTGGTGGTGGTTTTGGGCTTAAACCTCCTCCCAGGCCTGTGTTGAAGTCCTCTGATAATGACGCGGTTTTAGGATCGGGTTCGGGTTTAGGGGGTTCGTTGAGGAATAGTCAGGGTTCGGATAATGTGGATGAGAGGAATAAGGTGATTGAGTCACTTGGAGATGTTTTGGAGAAGGCTGAAAAACTTGGGAATTCTAAGTTGGGTGGTGAAAGAAGTAATGGTTTGGTAAATAATCCGGTAAGACCTGAGATAAATGATAAACCTAAGGATGTTAAACCGGTAAGACCTGAGATAAATGATAAACCTAAGGATGTTAAACCGGTAGGTTCGTTACAAAAACATACATCTAAGACGTTGAAGAGTATATGGCGGAAAGGGGATTCGGTTGCGAGTGTGCAGAAGGTTGTGAAGGAAGTTGTTAGGCCTAATATCAAGAGTAGTGAAGTGGGGGAATCTTTAATAGGGGGAGGGGAGAAGGTAACATCCAAGACTCGTGATCCTCAGCTTTCTTTAAGTCCTCTACCGACATTACAATCTAGGCCTTCTATTGCCCCCCCGCCGCCACCACCGCCACCGCCGCCTATTAAAAATGCCGTTATCTTGAAGGATGATAAAGGGCAAGGCGAAACACCGGTTAATTCTAAAGAAAAAAAGGCGCCTATCTTGATCGATAAATTTGCTTCAAAGAAACCGGCAGTTGACCCTGCGGTGGCTCGAGCAGTTCCAGCTCCTTCTAAACCAGGGAAGGCCCCTCCCCAAGGAAGGTTTAACGATGATTTCCGGAAGAAAGGTGCTACGTCTGGGGTAGGACCAAGAAGACGTAGGGTAGTGAATAAGGATGGGAATACTGATGAGGACACTCGTGGTACTGCAAGAAAAGGAAGGAAGTTGAATAAAGCGAGTCGTAGGGCTGTACGGCTTCAGGCTGCCAGGGATGCTGCTCCGGTTAAAGTTGAAATTCTAGAGGTCAGCGACCAAGGTATGCTGGTGGAAGAGTTGGCATACAATTTGGCGATTACTGAAGGTGAAATCCTCGGTTCTCTATACTCCAAGGGGGTTAAACCAGATGGGGTACAAACTCTAGACAAAGATATGGTGAAGATGATATGTAAAGATTATGAAGTGGAAGTTATCGAAGCCGATCCTTTCAAAGTTGAAGAATTAGTGAAGAGAACGGAAATTCTTGAGGAAGATGACCTAGACAAACTCAAAGATAGGCCTCCTGTTATTACTATCATGGGTCATGTTGATCACGGCAAGACAACACTTTTGGATTATATACGGAAGACCAAGGTAGCGGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGAGCATATAAAGTGCAAGTACCTTTTGATGGCAAAACATTGCCGTGTGTTTTTCTAGACACTCCTGGGCATGAGGCATTTGGGGCAATGAGAGCCCGCGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAAAGAAGCTATAGCTCACGCCAAAGCAGCAGGAGTACCCTTAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAGTCCAGATCGAGTTATGCAAGAACTTTCTTCAATTGGTTTGATGTCAGAAGACTGGGGTGGCGACATCCCGATGGTTCAGATAAGTGCTCTTCAAGGGGAGAATGTAGACGATCTTTTGGAAACCGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCCGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCGTTTGCGACATTTATTGTGCAGAATGGAACACTCAGAAGGGGTGATATAGTAGTCTGTGGAGGAGCTTTTGGAAAGGTAAGAGCTTTATTCGATGATGGTGGGAAGCGTGTCGATGAAGCTACACCTTCTATACCTATCCAGGTTATTGGATTGAATAATGTTCCAGTCGCTGGTGATGTATTTGAGGTTGTTGAATCCCTTGATATTGCACGTGAAAAGGCAGAGTCTCGTGTTATGTCATTGCGAGATGAACGTATTTCAGCAAAGATGGGAGATGGCAAGGTCACTCTTTCTTCGTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTAGACTTGCACCAATTGAATATGATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCCGTCAAACAAGCCCTGCAGGTGCTACCACAAGATAATGTCACGCTGAAGTTTTTGATGGAAACAACCGGTGATGTAAGCACAAGTGATGTTGACCTTGCCGCAGCAAGTAAAGCCATTATTTTTGGATTTAATGTCAAAGCACCAGGCTCCATAAAAAGCTATGCAGATAACAAAGCTGTTGAGATACGATTATATAAAGTTATTTATGAATTAATTGACGATGTACGAAAAGCAATGGAAGGACTCCTCGATTCTGTTGAGGATCAAGAAGCAATTGGCTCAGCAGAATTACGGGCTGTATTCAACAGTGGTAGTGCCCGTGTTGCTGGATGCATGGTTACAGACGGAAAGGTTACCAAAGGTTGTGGCATTCGGGTCATTCGGAAGGGAAAAGTAGTTCATGTTGGTATTCTCGATTCTTTGAGGCGGGTGAAAGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGCGGACTTGCGTTAGAAGACTACGATGAATGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAATTGAGAAGAGGAGAACCCTTGAGGAGGCCTCAGCATCAATGGCAGCAGCAGTGGAAGGAGTAGGAGCTTAA 3069 0.4412 MFILVGNVQGTMSSLASPVTLGSFIGASSSHSVVRRVSLSRGNCVKGKKRWHCVSLSVCRYSVTTTDFVADHGNPVSLDSSNNGDTDKGGGGGFGLKPPPRPVLKSSDNDAVLGSGSGLGGSLRNSQGSDNVDERNKVIESLGDVLEKAEKLGNSKLGGERSNGLVNNPVRPEINDKPKDVKPVRPEINDKPKDVKPVGSLQKHTSKTLKSIWRKGDSVASVQKVVKEVVRPNIKSSEVGESLIGGGEKVTSKTRDPQLSLSPLPTLQSRPSIAPPPPPPPPPPIKNAVILKDDKGQGETPVNSKEKKAPILIDKFASKKPAVDPAVARAVPAPSKPGKAPPQGRFNDDFRKKGATSGVGPRRRRVVNKDGNTDEDTRGTARKGRKLNKASRRAVRLQAARDAAPVKVEILEVSDQGMLVEELAYNLAITEGEILGSLYSKGVKPDGVQTLDKDMVKMICKDYEVEVIEADPFKVEELVKRTEILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPFDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTKEAIAHAKAAGVPLIIAINKIDKDGASPDRVMQELSSIGLMSEDWGGDIPMVQISALQGENVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGAFGKVRALFDDGGKRVDEATPSIPIQVIGLNNVPVAGDVFEVVESLDIAREKAESRVMSLRDERISAKMGDGKVTLSSLASAVSSGKLSGLDLHQLNMILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAAASKAIIFGFNVKAPGSIKSYADNKAVEIRLYKVIYELIDDVRKAMEGLLDSVEDQEAIGSAELRAVFNSGSARVAGCMVTDGKVTKGCGIRVIRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLALEDYDEWEEGDILEAFNTIEKRRTLEEASASMAAAVEGVGA* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0231 1022 MobiDBLite consensus disorder prediction 245 308 - -
Psa1g0231 1022 PRINTS GTP-binding elongation factor signature 499 512 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 PRINTS GTP-binding elongation factor signature 551 561 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 PRINTS GTP-binding elongation factor signature 567 578 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 PRINTS GTP-binding elongation factor signature 603 612 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 ProSitePatterns Initiation factor 2 signature. 957 979 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Psa1g0231 1022 Gene3D Translation factors 909 1005 - -
Psa1g0231 1022 TIGRFAM small_GTP: small GTP-binding protein domain 497 658 IPR005225 GO:0005525
Psa1g0231 1022 Gene3D - 803 907 IPR036925 -
Psa1g0231 1022 MobiDBLite consensus disorder prediction 269 287 - -
Psa1g0231 1022 CDD IF2_mtIF2_II 675 767 IPR044145 -
Psa1g0231 1022 Gene3D Translation factors 671 786 - -
Psa1g0231 1022 CDD mtIF2_IVc 914 996 - -
Psa1g0231 1022 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 495 668 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 MobiDBLite consensus disorder prediction 253 268 - -
Psa1g0231 1022 SUPERFAMILY Translation proteins 671 755 IPR009000 -
Psa1g0231 1022 Pfam Elongation factor Tu GTP binding domain 500 660 IPR000795 GO:0003924|GO:0005525
Psa1g0231 1022 Coils Coil 754 774 - -
Psa1g0231 1022 MobiDBLite consensus disorder prediction 322 391 - -
Psa1g0231 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 671 IPR027417 -
Psa1g0231 1022 Hamap Translation initiation factor IF-2 [infB]. 7 1004 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Psa1g0231 1022 SUPERFAMILY Translation proteins 909 1004 IPR009000 -
Psa1g0231 1022 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 38 1014 - -
Psa1g0231 1022 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 38 1014 IPR015760 -
Psa1g0231 1022 TIGRFAM IF-2: translation initiation factor IF-2 416 1006 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Psa1g0231 1022 Pfam Translation-initiation factor 2 803 896 IPR023115 -
Psa1g0231 1022 MobiDBLite consensus disorder prediction 363 383 - -
Psa1g0231 1022 Gene3D - 492 670 IPR027417 -
Psa1g0231 1022 CDD IF2_eIF5B 498 664 - -
Psa1g0231 1022 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 802 914 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0231 Psa-Chr1 12730860 12737163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0231 496 956 Eukaryotic Initiation Factors Gene Family AT1G21160 27.593 6.54e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0231 K02519 - gmx:100778924 1382.85