Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0199 ATGAGGAAATCTTTGGTTATAGGCTTTTTCATAACTATATGCTTCATTGCTTTTGTCATATCCAAGATTGTTATCTCAATCCTCCTCTATAAAAGATGGAAAAGAAAACATGTCATTTATGAAGGTTATACAGGAGGGAAGATGGTGATATTCAGGTCTTCAATTCTTAAATCTTTAACAACTGAGATGGTGTTAAAGAAAACACAGAAACTAAACAACAAGGACATTATTGGTTCTGGTGGTTACGGTGTAGTTTACGAACTAAAACTGAACGATTCCGCGGCCTTTGCTGTGAAAAGACTGAACCGCGGAACAGCAGAGAGAGATAAAGGTTTCGAGAGAGAGTTACAAGCAATGGCAGACATAAAACACCGCAATGTTGTTACTCTTCATGGATATTATAGTGCACCACACTACAATCTTCTCATATATGAGTTAATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAGATCGATGGACAAGAAGGTTTTGGATTGGCCAACAAGACACAGAATAGCTTTAGGTGCAGCTAGAGGAATATCGTATCTTCACCATGATTGTATCCCTCACATTATTCACAGAGACATCAAGTCAAGTAACATATTGCTGGATCAAAACATGGAAGCTCGAGTTTCGGATTTTGGGTTAGCGACGTTGATGGAACCAAACAAAACTCATGTTTCGACGATTGTTGCTGGAACTTTCGGATATTTGGCTCCAGAATATTTTGATACAGGAAGAGCAACAGTCAAAGGGGATGTTTACAGTTTCGGAGTTGTGTTGTTGGAGCTTTTAACCGGGAAGAAACCTAGTGATGAAGCATTCATGGAAGAGGGAACCAAACTCGTCACATGGGTGAAAGCTGTTGTTCAAGAGAAGAAAGAGGAATTGGTTCTTGATAGTAGCTTAGGTTCATGTTGTCCAATGCATGAGGTCAACAAGGTGTTCAACATCGCAATGATGTGTCTTGAACCAGATCCTCTGAACAGGCCAACCATGGCTGAAGTCGTCAACTTGCTCGAGAAAACCGAAACAGCATCCTGA 1050 0.4038 MRKSLVIGFFITICFIAFVISKIVISILLYKRWKRKHVIYEGYTGGKMVIFRSSILKSLTTEMVLKKTQKLNNKDIIGSGGYGVVYELKLNDSAAFAVKRLNRGTAERDKGFERELQAMADIKHRNVVTLHGYYSAPHYNLLIYELMPNGSLDSLLHGRSMDKKVLDWPTRHRIALGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKAVVQEKKEELVLDSSLGSCCPMHEVNKVFNIAMMCLEPDPLNRPTMAEVVNLLEKTETAS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0199 349 Gene3D Transferase(Phosphotransferase) domain 1 147 349 - -
Psa1g0199 349 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Psa1g0199 349 PANTHER BNAA07G39120D PROTEIN 1 346 - -
Psa1g0199 349 SMART serkin_6 71 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0199 349 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 346 - -
Psa1g0199 349 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Psa1g0199 349 Pfam Protein kinase domain 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0199 349 SUPERFAMILY Protein kinase-like (PK-like) 51 343 IPR011009 -
Psa1g0199 349 ProSiteProfiles Protein kinase domain profile. 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0199 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0199 Psa-Chr1 11533774 11536133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0199 3 343 Receptor kinase-like Gene Family AT2G35620 45.058 3.42e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Psa1g0199 Pkinase 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0199 - - ahf:112703495 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0199 1 11533774 11536133 Psa1g0199 1 11533774 11536133 ECH