Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0195 ATGGCAGAACAAGGTCCACATCCACCACCAAACGATCTATGTTCAATCTGCCATGGAAACTTCCAAATCCCATGTCAAGCAAATTGCTCCCACTGGTTTTGCGCTAACTGTATACTCCTTGTTTGGCGTCACACTTCCGGCATTCAACCGTGCAAATGTCCGCTCTGTCGTCGACCGATTACCCTCCTGGTTCCGACGAATGACATAAACAACGATTCGCCGCAAATTCTGTCGGAGATTCAGATTTATAACCGGACTTTTGGTCAGCAATCGAATGCTCCTATTGCTCAGAGAATCCTTGATCTTCCGTTTCTTTTGAAGAGGCTTTTTAGGGATTTTGTTAACCCTAATAATTCGCTTCCTCTTGTTATCAGAGCTAGGGTTTTCCTTTCGATGATACTGAGTGTCATATACATCTTCAGCCCGATTGACATCATTCCAGAAGGAATATTGGGAGTGGTTGGTCTCTTGGACGATGTTCTAATTGCGCTAATCTTCTTCCTACATGTTGCTACCCTGTATAGATCAGTTCTTTACAACCGTCATGGAGGTTCATGA 558 0.4409 MAEQGPHPPPNDLCSICHGNFQIPCQANCSHWFCANCILLVWRHTSGIQPCKCPLCRRPITLLVPTNDINNDSPQILSEIQIYNRTFGQQSNAPIAQRILDLPFLLKRLFRDFVNPNNSLPLVIRARVFLSMILSVIYIFSPIDIIPEGILGVVGLLDDVLIALIFFLHVATLYRSVLYNRHGGS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0195 185 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Psa1g0195 185 PANTHER UNCHARACTERIZED 9 185 IPR038896 GO:0061630
Psa1g0195 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Psa1g0195 185 Pfam Zinc finger, C3HC4 type (RING finger) 14 56 IPR018957 GO:0046872
Psa1g0195 185 SMART ring_2 14 56 IPR001841 -
Psa1g0195 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 98 IPR013083 -
Psa1g0195 185 SUPERFAMILY RING/U-box 10 70 - -
Psa1g0195 185 PANTHER BNAC07G13660D PROTEIN 9 185 - -
Psa1g0195 185 ProSiteProfiles Zinc finger RING-type profile. 14 57 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0195 Psa-Chr1 11277498 11279742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0195 39 185 C3H Transcription Factor Family AT1G72175 63.158 1.87e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0195 K15707 - csin:114301598 258.07