Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0176 ATGGATTCTGAAGATGATATGCACGATGCCAACGATCTCGACTCTCTCGATGACGATTTCTACAGTGGCGAAACCGAAGATGCTCCCATGGATTACTACACCGACTACGATGACGATGCTGATGATTACTTTGATGATGGCGATGATTCTGACCCCGCCGACTCTCGCAGACCCGAGCAAAATTTCACCATATTGAAAGAATCAGATATCCGGCAACGGCAGGAAGATGATATCAGTAGAGTAGCAGCTGTTCTTTCTATACCGCGAGTTGCTGCAAGTATCTTACTTCGTCATTATAATTGGAGTGTTAGTAAAGTTAATGATGCTTGGTTTGCTGATGAAGAGCAGGTTAGAAAAACAGTTGGTTTGTTGGAGAAGAAAGTTTATGAAAATCCTGATGCCAACGAGCTTACTTGCGGCATCTGTTTTGAAGTTTATCCTCCTTCTAAGATCCAAACTGCTTCTTGTGGCCATCCATATTGCTTTTCATGCTGGGGAGGATATATTGGAACTTCAATTAACGATGGTCCAGGATGTTTGATGCTAAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGTATCTGCTGAAGATAAAGAGAAGTATGACCGTTACCTTCTTAGATCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGCGAGCATGCAGTTAATTTCGATGCTGGCAGTGGAAGTTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGATTGTGGCACTGTGTCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGACCATGGTGAAAGGACTGGCGGCTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTATTAATATTGAGAAGCTCAGTGATACACAGTGCCAACCTGAATCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGTTTCTATTTAGCAGAGCATGAACAGGGGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTCGGGCATTAGAGAATGGTTTATGTGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGTAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGATTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCCAATGTTAGATCTGCCACTGCATGCCAGATGTGCAATCAGCCGCGTCGATGA 1773 0.4315 MDSEDDMHDANDLDSLDDDFYSGETEDAPMDYYTDYDDDADDYFDDGDDSDPADSRRPEQNFTILKESDIRQRQEDDISRVAAVLSIPRVAASILLRHYNWSVSKVNDAWFADEEQVRKTVGLLEKKVYENPDANELTCGICFEVYPPSKIQTASCGHPYCFSCWGGYIGTSINDGPGCLMLRCPDPSCGAAVDQDMINLLVSAEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGSGSYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTDHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTINIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLAEHEQGKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTIRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPRR* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0176 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Psa1g0176 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Psa1g0176 590 SMART zf_4 564 588 IPR001876 -
Psa1g0176 590 SUPERFAMILY RING/U-box 289 337 - -
Psa1g0176 590 Gene3D - 560 590 - -
Psa1g0176 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Psa1g0176 590 Gene3D - 266 521 - -
Psa1g0176 590 SMART ibrneu5 283 344 IPR002867 -
Psa1g0176 590 SMART ibrneu5 208 270 IPR002867 -
Psa1g0176 590 MobiDBLite consensus disorder prediction 1 60 - -
Psa1g0176 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Psa1g0176 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Psa1g0176 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Psa1g0176 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Psa1g0176 590 MobiDBLite consensus disorder prediction 530 552 - -
Psa1g0176 590 SUPERFAMILY RING/U-box 208 277 - -
Psa1g0176 590 Pfam Ariadne domain 357 519 IPR045840 -
Psa1g0176 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Psa1g0176 590 SUPERFAMILY RING/U-box 134 220 - -
Psa1g0176 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
Psa1g0176 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Psa1g0176 590 MobiDBLite consensus disorder prediction 1 49 - -
Psa1g0176 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0176 Psa-Chr1 10641796 10650979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0176 17 589 ARIADNE family AT1G65430 70.711 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0176 K11968 - gmx:100810427 1043.49