Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0161 ATGGTTGGGTTCCAGAGCGAGCATATGTCTGGGAATGGGAACAACAAGTATAATGCTGAGTATAACAACCCTGGTGCTTCCCATGTTGAACGATTGCTGGAAGGTGCAGCAAAGGCTCTTGGGGATGGATATGTAAGGGAAGATGGAAAGCCTATGAGACAACGGCTTTTGGTTGTGGCTAATAGACTGCCGGTTTCGGCTGTTCGGAAAGGTGAGGATTCTTGGTCATTAGAGATAAGTGCTGGAGGCTTGGTGAGCGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATTGGTTGGGCCGGTGTCGATGTGCCAGATGAGGTTGGACAGAAGACACTCACTGAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTACTGAAGATATTGTTCATCGGTACTATAATGGCTATTGCAATAACATTTTGTGGCCCCTTTTTCATTATCTTGGACTTCCGCAAGAAGACCGTCTAGCAACAACTCGTGGTTTTCAATCTCAGTTTGACTCGTATCAGGTGGCAAACCAAATGTTTGCTGATGTTGTAAACAAGGTCTATGAAGAGGGAGATATTGTTTGGTGTCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAAATTTAACAGCAAAATGAAAGTTGGCTGGTTTCTCCATACCCCTTTTCCATCTTCTGAAATTCATAGGACTCTGCCATCTCGCTCAGAGCTTCTTCGTGCAGTTCTTGCTGCTGACTTGGTTGGTTTCCACACCTATGATTATGCACGACACTTTGTTAGTGCATGTACTCGCATTCTCGGACTTGAGGCAACACCAGAAGGGGTCGAGGATCAAGGGAAACTGACTCGGGTTGCTGCATTTCCAATTGGTATAGACTCAGATCGATTCATACGTGCACTTGACACTTCTAACGTTCAAAATCCCATCAAAGACTTGCAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGGATTCCTCAAAAACTTCTAGCTTTTGAAAAGTTCTTGGAAGACAATGTTGAATGGCATGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCCGAGTACCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGATCACTGAGTGCTGTTCCTATACATCACCTGGATCGCACTCTTGACTTTAATTCACTATGTGCTTTGTACGCTGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAGTTTGTGGCCTGCCAAGAAAAAAAGAAGGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCTCAATCTCTTGGTGCTGGGGCACTTCTGGTCAACCCCTGGAACATCACAATAGTTGCTAAAGCAATTTCTAAAGCTCTGAACATGCCATCTGCAGAGAGAGAGAAGCGACACAGGCATAACTTTCATCATGTAACAACACACACTGCACAGGAGTGGGCAGAAACTTTTGTAAGTGAGCTTAATGATACTGTTGTGGAAGCACAACTGAGGACAAAGCAAGTTCCACCACGGCTCCCAACCGACAAGGCGATTCAACAGTATCTGACGTCAACCAACCGGCTACTTATTTTGGGATTCAATGGAACATTAACTGAACCAGTTGAGAGAAAAGGCGATCAGTTGAAAGAAATGGAACTCTCAGTGCATCCAGAACTGAAACTACCCTTGAAAAAACTTTGCAGTGACCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGGTAGAAAGATTCTAGATGAAAACTTTAAAGAATACGACACATGGCTAGCAGCGGAGAATGGGATGTTTTTGAACTCTTCAAATGGAGAATGGATGACCACAATGCCAGAACAATTGAATATGGAATGGGTTGACAGCGTGAAGCATATTTTTGAGTACTTTACTGAAAGAACACCTCGCTCACATTTTGAAGAAAGAGAAGCTTCACTTGTATGGAACTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTACAACATCTTTGCACAGGTCCTATTTCAAATGCATCAGTTGAAGTCGTTCAAGGGAGCCGATCAGTTGAGGTCCGAGCTGCTGGTGTTACAAAGGGAGCAGCCATTGACCGCATCCTGGGGGAGATAGTTCACTGTAAATCCATGACAACACCTATTGATTATGTTCTGTGTATTGGACATTTTCTGGCAAAGGATGAAGATATTTACGACTTTTTTGAGCCAGAACCTTCCTGTTTTGGTGCAAGTCTTCAAAGAAGCAAGTTAACAGAAGCAGCTAAGTTTGCTAATGAGAAGGTGTCACCTTTGAAGACCCCATCGGTTAAAAATGGATTCAAGTCAACAGATCAAAACAAGGGACAACAACCTATCTCAAATTCACCGAAGAAAACAAGTAAACTTTTCAGCCGTACAGCGCGGAAGCCAGCTCCCGAAAAGATCACTTGGAATGTCCTTGACCTCAAGAAAGAGAATTACTTCTCATGCGCAGTTGGTAGAACTCAAACAAATGCTCGTTTTACACTTCCATCATCTGATGAAGTTGCTGAATTTCTGAAGAAACTTGCAAATGCATAG 2658 0.4296 MVGFQSEHMSGNGNNKYNAEYNNPGASHVERLLEGAAKALGDGYVREDGKPMRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVDVPDEVGQKTLTEALAEKRCIPVFLTEDIVHRYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFDSYQVANQMFADVVNKVYEEGDIVWCHDYHLMFLPQCLKKFNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDQGKLTRVAAFPIGIDSDRFIRALDTSNVQNPIKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEDNVEWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLSAVPIHHLDRTLDFNSLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNITIVAKAISKALNMPSAEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTDKAIQQYLTSTNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKLPLKKLCSDPNTTVVVLSGSGRKILDENFKEYDTWLAAENGMFLNSSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHCKSMTTPIDYVLCIGHFLAKDEDIYDFFEPEPSCFGASLQRSKLTEAAKFANEKVSPLKTPSVKNGFKSTDQNKGQQPISNSPKKTSKLFSRTARKPAPEKITWNVLDLKKENYFSCAVGRTQTNARFTLPSSDEVAEFLKKLANA* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0161 885 CDD GT20_TPS 55 520 IPR001830 GO:0003824|GO:0005992
Psa1g0161 885 Gene3D Glycogen Phosphorylase B; 44 294 - -
Psa1g0161 885 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 20 883 IPR001830 GO:0003824|GO:0005992
Psa1g0161 885 MobiDBLite consensus disorder prediction 800 833 - -
Psa1g0161 885 Gene3D - 642 722 - -
Psa1g0161 885 CDD HAD_TPP 553 770 - -
Psa1g0161 885 Gene3D - 555 736 IPR023214 -
Psa1g0161 885 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 55 520 IPR012766 GO:0003825|GO:0005992
Psa1g0161 885 SUPERFAMILY HAD-like 552 883 IPR036412 -
Psa1g0161 885 TIGRFAM T6PP: trehalose-phosphatase 551 827 IPR003337 GO:0003824|GO:0005992
Psa1g0161 885 Pfam Trehalose-phosphatase 558 773 IPR003337 GO:0003824|GO:0005992
Psa1g0161 885 MobiDBLite consensus disorder prediction 800 827 - -
Psa1g0161 885 Gene3D Glycogen Phosphorylase B; 297 504 - -
Psa1g0161 885 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 20 883 - -
Psa1g0161 885 Pfam Glycosyltransferase family 20 55 520 IPR001830 GO:0003824|GO:0005992
Psa1g0161 885 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0161 Psa-Chr1 10256688 10264217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0161 10 884 Trehalose Biosynthesis Gene Families AT1G78580 75.364 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0161 K16055 - gmx:100789554 1445.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0161 1 10256688 10264217 Psa1g0161 1 10256688 10264217 ECH