Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0127 ATGGCTCGCATATTATTTGGAAGTTTTGTTGATTCTTTCAGTGTGACCTCCAGGAAGGCGTATATTGCTGAGTTCATCTCAACTTTGATCTTTGTTTATGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCTCTTGATCCTTCTGGGTTATTAGCTATTGCTATTTGCCATGGTTTTGCTCTATTTGTTGCTGTTTCTGTTGGAGCCAACGTTTCTGGTGGCCATGTAAACCCTGCTGTGACCTTTGGAATGGCTCTTGGAGGACAGATCACAATCGTCAATGGAATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTCGCATGCTTCCTCCTCAAGTTTGCTACAGGTGGCTTGAAAATTCCTGTCCATAGTATTGCATCTGGTGTTGGAGCTAGTGAAGTAGTTGTTACAGAGATTATGATAACATTTGGATTGGTGTACACAGTGTATGCAACAGCAGCTGATCCTAAGAAAGGTTCAATAGGGACAATTGCACCCATTGCTATTGGTTTCATTGTTGGTGCAAATATCTTAGCTGCAGGACCATTCTCTGGTGGATCAATGAATCCAGCACGTTCTTTTGGGCCAGCAGTTGTTAGTGGTGACTACCATAACAACTGGATTTATTGGGTTGGACCCCTTGCTGGTGGTGGTTTGGCTGGTCTCATCTATACCCATCTCTTCAATATTTGTCCCTTAAACGACCATGTAACTTTGGTTAAATGA 750 0.432 MARILFGSFVDSFSVTSRKAYIAEFISTLIFVYAGVGSAIAYGKLTSDAALDPSGLLAIAICHGFALFVAVSVGANVSGGHVNPAVTFGMALGGQITIVNGIFYWIAQLLGSIVACFLLKFATGGLKIPVHSIASGVGASEVVVTEIMITFGLVYTVYATAADPKKGSIGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDYHNNWIYWVGPLAGGGLAGLIYTHLFNICPLNDHVTLVK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0127 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 SUPERFAMILY Aquaporin-like 15 237 IPR023271 -
Psa1g0127 249 CDD MIP 19 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PANTHER MIP PROTEIN 1 237 - -
Psa1g0127 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Psa1g0127 249 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Psa1g0127 249 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g0127 249 PANTHER AQUAPORIN-8 1 237 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0127 Psa-Chr1 7864810 7866407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0127 1 247 Major Intrinsic Protein MIP AT3G16240 74.494 5.83e-131 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0127 K09873 - gmx:100803901 385.571