Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0123 ATGTCTATAAGTTTGCATATGATTCGGCCAGGTCCAACAACATTGTTTTCGTTCTTGTTAGTGATCCTCCATCTATCAGCATCAGATCAATTGCGATTCATTCTACACAACGGATGCAACTATAAAGTGTGGCCAGCTTTATTTACTACCAGTGAAAATAGAAATTTTCAAACCATTAAACATGGTTTAGAACCGCATGATCCGAACACAATCACAACTCCTGATGCGTGGAATGGCTATTTATGGGGCCGAACTCTCTGCACAGGCACAGAAGGAAATTTCACATGTCTTACCGGCGACTGTGGTACCGCGAATGTGTCCTGCGATGAAAACGGAACCGTGCCGCGTGCTACCCTAGCCGAATTTCGTTATAGCTATGAAGGTGGAATTTACTTTTACAACATTAATGTGGTAGAAGGTTTCAACATTCCCATAGTAGTGACTCCTATAAGTGAAGCCAGCCAGAATTTGAATTGCATAAGTGCAGGATGCCCTATGAGTATAAATACTATTTGCTCTATAGAAACTTGTAAACCAAGTTCTTACTCTCCCACATTCAAGAAAGCATGTCCTCAGGCCTATAAGGATTCTTATGACAATGGGACAAACACATTTAGTTGTTCAACTAAGTCTTTCAAGATTATCTTTTGCCCAGCTTTCAGCACGGGATCATTGAATCAAAGTGTAAGTGTAGGTGACTCACTCATTGCTGGAAATGGACCAACTCGATGGATCTCTCCTTTAGAAGATTTTGCATTTGGGTTTTACCAACTTCCTAATGAACTTTTCTTACTAGCTATATGGTATCACAAAATACAAAACGATTCGATTATTTGGTATGCAAATGAAGGCAACCCAACTCCTAAGGGATCAAGATTGGTATTAAATAATTCTTATGGGTTGGTACTTACTAGCCCTAAAGGTTCAGAGCTATGGACATCATCAAATTTTACTTCTGGTAGAATTTCAAGAGGTCTAATGAAGAATGATGGAAATTTTCAATTACTAGACCAAAATTTTGTTGTATTATGGGAAAGTTACAATCATTTTACGGACACATTAGTTCCTGGTCAAGCAATGGATTTGAACACCCATCTTTATGCTCGACGAGGAGAAATCAACTTTTCACGAGGAAGATTTGAACTTTGCCTACAAGAAAGTGGGGATGTTGTGCTCAACCTTGTAAGTTTTCCTTCAAATGCAAACATTAATGCTCAATATGAGGCTTACTATGATAGTCGCACTATTGATCCGTATAAAAAATCAACAAATGTTGGTCAGAAATTTATATTTCACAAATATAATTTCTTCTTATACATATTGAAAAAGAACGGGTCAAGGTTTTCTATCATTGACAATCAAAATAAGACACTTTTAAATGATGACTTCTACTACAAAGCAACAATCAATTATGATGGAGTATTTACTCTGTCATATTACCCTAAAGATCAAAACAATGGTAATAGTTGGATTGTTGCAAAGACAATACCTGAGAACATTTGCTTGAGTTATAATTTTAACAATGGTCAAGGTGTTTGTGGAATGAATAGTATTTGCAACCTTAGACATGATCAAAGGCCAATGTGTACATGTCTAAAAGGTTATTCTCTAATTGATTCATACAACATGTATGGTGGTTGCAAAAAGGATTTGCCAGTCATTTGTCAAAGTAGGCATAATGGTTCACAAAAGAACACGCATATGATGATGAAACTGTCCAACGTTTCTTGGCCTAAATCTGATTATGAAACATGCAATTCTTGTACTCTTGAAGAATGCAAGGATTATTGTTTGCAAGATTGCTTATGTGTGTTGGCTTTTTTTAATGAAAGTTCTTGTTGGAAGAATAACCTACCACTCTTACATGGGAGAAAAGAGTTGGCGGTAAAAGGAATTTATATCCTAAAAGTAAATAAAACTAATACTCCATCGTCCCTCTCCGATGGGATAAAAGATCTAGATAATAGTATAACCAAAAAGAAAAAAGATCATAAAACTTTGATTATTGTGATATTAGTTATTATTGGAATATCTATTTTTATGACTTTAAGTTTTGTTGGTGCAATATTTTATTGGCGCAACCATAACAAGATTGAAAGTAGTGTATCAAACACAAGTGTCATTGACAAAAATTTGAGAGTTTTTACCTTTAAGGAAATTACAGAAATAACAAACAACTTTAGAGAAGAATTAGGAAGAGGTTCTTGTAGCATTGTATACAAAGGAACAATAGATTCAGATATTTGTGTGGCTGTTAAAAAACTAGATAAGTTGTTCCAAGATAGTGATAAAGAATTTCAAAATGAAATGGATGTGATAATTGAAACTCATCATAGAAACCTTGTTCGTCTTCATGGATATTGCAGTGAGGAACAACACAGAATTTTGGTGTATGAGTTAATGAGTAATGGTACTCTAGCAAGCTTCCTTTTCACCCCTTTGAAACCAAGTTGGAACCAACGAGTTTGGATTATCATTGGGATTGCTAGGGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAAATTATCCATTGTGACATAAAGCCACAAAACATACTTCTTGATGATGATTACAATGCTAAGATTTCCGACTTTGGGTTAGCAAAACTATTATTGATTAATCAAAGTCACACAAAAACTGGAATTAGAGGAACCAAAGGTTATGTTGCACCAGATTGGTTTAGGAGTGCACCGATCACTGTTAAAGTTGATGTTTATAGTTTTGGTGTGTTGTTACTAGAGATTATATGTTGTAGGAAAAATGTAGAGGATGATAATGTTAGTGAAGAAAAAAGGATTTTAATTGATTGGGGATATGATTGCTACAAGGCTGGAAAAATGGACATTCTTCTAGAAAGTGAATATGAGGTAGTAAATGATACGAGTAGATTGGAAAAATTTGTCATGATTTCTATTTGGTGCACTCAAGAAGATCCATCTCTAAGGCCACCAATGAAGAAGGTTTTGTTAATGCTAGAAGGGATCGTTGAAGTTGAAATTCCTCCAAGTCCATACTTGTATGGTTCTTCTAATTAA 3039 0.3527 MSISLHMIRPGPTTLFSFLLVILHLSASDQLRFILHNGCNYKVWPALFTTSENRNFQTIKHGLEPHDPNTITTPDAWNGYLWGRTLCTGTEGNFTCLTGDCGTANVSCDENGTVPRATLAEFRYSYEGGIYFYNINVVEGFNIPIVVTPISEASQNLNCISAGCPMSINTICSIETCKPSSYSPTFKKACPQAYKDSYDNGTNTFSCSTKSFKIIFCPAFSTGSLNQSVSVGDSLIAGNGPTRWISPLEDFAFGFYQLPNELFLLAIWYHKIQNDSIIWYANEGNPTPKGSRLVLNNSYGLVLTSPKGSELWTSSNFTSGRISRGLMKNDGNFQLLDQNFVVLWESYNHFTDTLVPGQAMDLNTHLYARRGEINFSRGRFELCLQESGDVVLNLVSFPSNANINAQYEAYYDSRTIDPYKKSTNVGQKFIFHKYNFFLYILKKNGSRFSIIDNQNKTLLNDDFYYKATINYDGVFTLSYYPKDQNNGNSWIVAKTIPENICLSYNFNNGQGVCGMNSICNLRHDQRPMCTCLKGYSLIDSYNMYGGCKKDLPVICQSRHNGSQKNTHMMMKLSNVSWPKSDYETCNSCTLEECKDYCLQDCLCVLAFFNESSCWKNNLPLLHGRKELAVKGIYILKVNKTNTPSSLSDGIKDLDNSITKKKKDHKTLIIVILVIIGISIFMTLSFVGAIFYWRNHNKIESSVSNTSVIDKNLRVFTFKEITEITNNFREELGRGSCSIVYKGTIDSDICVAVKKLDKLFQDSDKEFQNEMDVIIETHHRNLVRLHGYCSEEQHRILVYELMSNGTLASFLFTPLKPSWNQRVWIIIGIARGLVYLHEECCTQIIHCDIKPQNILLDDDYNAKISDFGLAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITVKVDVYSFGVLLLEIICCRKNVEDDNVSEEKRILIDWGYDCYKAGKMDILLESEYEVVNDTSRLEKFVMISIWCTQEDPSLRPPMKKVLLMLEGIVEVEIPPSPYLYGSSN* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0123 1012 SMART tha2 33 218 IPR001938 -
Psa1g0123 1012 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 142 1011 - -
Psa1g0123 1012 SUPERFAMILY Osmotin, thaumatin-like protein 32 218 IPR037176 -
Psa1g0123 1012 SMART serkin_6 725 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0123 1012 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 142 1011 - -
Psa1g0123 1012 Pfam Thaumatin family 37 173 IPR001938 -
Psa1g0123 1012 Pfam Thaumatin family 175 218 IPR001938 -
Psa1g0123 1012 SMART blect_4 226 350 IPR001480 -
Psa1g0123 1012 CDD STKc_IRAK 731 996 - -
Psa1g0123 1012 Gene3D Thaumatin 31 219 IPR037176 -
Psa1g0123 1012 Pfam S-locus glycoprotein domain 460 536 IPR000858 GO:0048544
Psa1g0123 1012 ProSiteProfiles Protein kinase domain profile. 725 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0123 1012 Pfam D-mannose binding lectin 277 364 IPR001480 -
Psa1g0123 1012 Pfam Protein kinase domain 728 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0123 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Psa1g0123 1012 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Psa1g0123 1012 PRINTS Pathogenesis-related protein signature 80 91 IPR001938 -
Psa1g0123 1012 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Psa1g0123 1012 PRINTS Pathogenesis-related protein signature 208 217 IPR001938 -
Psa1g0123 1012 ProSiteProfiles Thaumatin family profile. 33 218 IPR001938 -
Psa1g0123 1012 SUPERFAMILY alpha-D-mannose-specific plant lectins 263 393 IPR036426 -
Psa1g0123 1012 Gene3D Phosphorylase Kinase; domain 1 689 800 - -
Psa1g0123 1012 ProSiteProfiles Bulb-type lectin domain profile. 220 348 IPR001480 -
Psa1g0123 1012 Gene3D Transferase(Phosphotransferase) domain 1 801 1001 - -
Psa1g0123 1012 Gene3D - 224 350 IPR036426 -
Psa1g0123 1012 SUPERFAMILY Protein kinase-like (PK-like) 711 1005 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0123 Psa-Chr1 7716139 7722508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0123 711 995 Receptor kinase-like Gene Family AT1G60800 43.151 3.25e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa1g0123 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0123 - - mtr:MTR_2g067980 1214.13