Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0099 ATGCCCTTATCTCAACCTCCCATGGCTTCTTCAATCCCTCACCACTTCTATCCAAACTACACTTCTGATTTCACAGCAAACCAAGGGTTGATGTCTTCATCAATTATCGACAATAATACTATGATGTGGGGTTGTCAAGAAAATATCATGCCTGTTTTTGATAATTATGGAACATATGATCAAATCGTGTCACTTGATTGTGATGCTATGTCTTCTGGTACTTGGGTTCCCAATTTTGTTGAGCAACAAGATTTTGCGGTTCCGGCTTTGTTATCGGATTGTAAACTCGGATTCTATGGTGGAGGGTTTCAGAATTTTAATGGAAGATATAGTAACAATAATCAGCCACATGTTGGTCATGAGTTTGTAGAAGATCAATGTTGCGGTTTTGTTGAAGATATTAAACCTCCTCCTGCAGTTTATCCTAATGTTTCAAGAGAAAATTGGGGGATTCAAGGTAATCAAATAGCAGCAGTGGAAGAACCAAATATAAAAGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAATCAAAGAAACTTCAACAAAACCATCAAGTATGCATGTCGGAAAACTTTAGCTGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGAAACAATGAAATATGTGAAGAAGATCATATGGCCACAAAAAAGCTTGAGAATCATCATGATCATATTAATGAAGACTTTTATGGTTCTGATTCATTCCAGTTCCAGTTAAAGAATGAAGAAGAGGATTGGCTTCAAGAAGCCATGGCAAGTTTGGTGTATTTATCTCATTCATCACCAGAAGATATATGA 834 0.3657 MPLSQPPMASSIPHHFYPNYTSDFTANQGLMSSSIIDNNTMMWGCQENIMPVFDNYGTYDQIVSLDCDAMSSGTWVPNFVEQQDFAVPALLSDCKLGFYGGGFQNFNGRYSNNNQPHVGHEFVEDQCCGFVEDIKPPPAVYPNVSRENWGIQGNQIAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEDHMATKKLENHHDHINEDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPEDI* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0099 277 Pfam CCT motif 174 216 IPR010402 GO:0005515
Psa1g0099 277 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 272 - -
Psa1g0099 277 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Psa1g0099 277 PANTHER ACTIVATOR OF SPOMIN::LUC2 8 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0099 Psa-Chr1 6179629 6182102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0099 170 226 C2C2-CO-like Transcription Factor Family AT5G15850 45.614 1.00e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa1g0099 CCT 8.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0099 - - cam:101492034 422.165