Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0097 ATGCGTCGAGCTCAGGACCTGCACCACCCCCTCCTCCTGGGACGCCTCCAATACCTAAAACCAAACAACACCATAAATCAGGTGGGGGAACTACCGCTGGCCAAGATGCTGGCAGTGGCACAAAAGATGAGGACAAAAAAATCTGGAATAGGAGGTGGTGTTATAGCTGGAATTGTGATCTCCATCATTGTTGTTGTGGCAATAGTAGCATTCTTTATGGTGAAGAGAAAATCGAAAAAGTCATCTTCTGATTTGGAAAAGTCGGGCAATCAATCCACTGCTCCCCCTCCTTCAAATGAAGCGCATGAAGTTACATCTGTGCAGACTTCTTCCGTACATGACTTGAAGAAGTTTGACACTTCTGCCTCAATAAATCTAAAACCTCCACCTATTGATCGCCATAAATCATTTGATAACAACGAAGTCTCAATCAACTCCCCTATTGTCAAGAAGACTGTGACACCTCCTGCAGATGTGCAATCATATTCTATAGCTGATCTTCAGATTACTACTGGCAGCTTCAGTATGGATCATCTCGTTGGTGAGGGGTCTTTCGGGCGTGTGTACCGTGCTCAATTTAATGATGGAAAGGTTCTTGCAGTGAAGAAAATAGATTCATCTGTCCTTCCCAATGATTTTACAGAAGATTTTTTAGAAATAGTGTCAAACATCTCCCATTTACACCATCCAAATGTAACAGAGCTTGTGGGTTATTGCTCAGAGCATGGACAACACCTCTTAGTTTACGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACGTGTCTGATGAATTCAGTAAACCATTGATATGGAATTCCCGTGTCAAGATAGCTTTGGGAACTGCACGCGCTTTAGAGTACCTGCATGAAGTTTGTTCTCCATCAGTTTATTGTGAGACGTTGAGCAGAGATGTGCTTTGA 927 0.4283 MRRAQDLHHPLLLGRLQYLKPNNTINQVGELPLAKMLAVAQKMRTKKSGIGGGVIAGIVISIIVVVAIVAFFMVKRKSKKSSSDLEKSGNQSTAPPPSNEAHEVTSVQTSSVHDLKKFDTSASINLKPPPIDRHKSFDNNEVSINSPIVKKTVTPPADVQSYSIADLQITTGSFSMDHLVGEGSFGRVYRAQFNDGKVLAVKKIDSSVLPNDFTEDFLEIVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHVSDEFSKPLIWNSRVKIALGTARALEYLHEVCSPSVYCETLSRDVL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0097 308 Pfam Protein tyrosine and serine/threonine kinase 176 292 IPR001245 GO:0004672|GO:0006468
Psa1g0097 308 PANTHER OS01G0253100 PROTEIN 41 299 IPR045271 GO:0004714|GO:0006468
Psa1g0097 308 ProSiteProfiles Protein kinase domain profile. 174 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0097 308 MobiDBLite consensus disorder prediction 81 107 - -
Psa1g0097 308 SUPERFAMILY Protein kinase-like (PK-like) 156 296 IPR011009 -
Psa1g0097 308 MobiDBLite consensus disorder prediction 85 107 - -
Psa1g0097 308 SMART tyrkin_6 174 307 IPR020635 GO:0004713|GO:0006468
Psa1g0097 308 Gene3D Transferase(Phosphotransferase) domain 1 159 307 - -
Psa1g0097 308 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524
Psa1g0097 308 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 41 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0097 Psa-Chr1 5646720 5648452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0097 61 298 Strubbelig Receptor Gene Family AT1G53730 67.078 2.85e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Psa1g0097 PK_Tyr_Ser-Thr 1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0097 - - gmx:100807707 381.719