Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0092 ATGAATCCACTGATTGCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGCACAGCTGCAGGGCAAGCTGTAGAGGGGATTGCGAGACAACCGGAAGCAGAGGACAAAATACGGGGTACTTTATTACTTAGTTTGGCTTTTATGGAAGCTTTAACTATTTATGGGCTGAGAATCTTGAGAACTATTCGAAATTCAGAAGAACTCCGGGAAACAGCCATTGAACAGCTGGAAAAAGCCCGGGCCCGTTTAAGGAAAGTAGAAATGGAAGCAGATCGGTTTCGAGTGAATGGTTATGCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAAGTTTGGAACAATTCGAAAATGACAAAAATAAAACCATTCATTTTGAACAACAAAGGGCGATTAATCAAGTCCAACAAAGTGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTTAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTACTATTGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGACGTAATGGCAGGTGAATTAGTAGAATTTAAAGAGGGTACCGTAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAACTTCGGAATCTCGGTTAATTGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTAGTAACTACTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATTATTTATGATGATCCCTCCAAACACGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCCGGAGATGTTTCAGCTTATATTCCTACTAATGTCATTTCCATTACAGATGGTCAAATATTCTTATCTGCCGATTTATTCAATGCTGGGATCAGACCCGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCCGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAACAGATAATAACTATTTATACTGGAACGAATAGTTATCTTGATTCAGTAGAAATTGCACAGGTAAGGAAATTTATCGTTGAGTTACGGGCTTATTTAAAAACGAAGAAACCTAAATTCAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCATTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTGA 1968 0.404 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLRILRTIRNSEELRETAIEQLEKARARLRKVEMEADRFRVNGYAEIEREKLNLINSIYTSLEQFENDKNKTIHFEQQRAINQVQQSVLQQALQGALGTLNSCLNNELHLRTIGATIGTVLQVGDGIARIYGLDDVMAGELVEFKEGTVGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISTSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVVCVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKHAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNSYLDSVEIAQVRKFIVELRAYLKTKKPKFNEIISSTKTFTGEAEAILKEAIQEQMELF* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0092 655 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 527 653 - -
Psa1g0092 655 Pfam ATP synthase B/B' CF(0) 69 166 IPR002146 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 525 IPR027417 -
Psa1g0092 655 Hamap ATP synthase subunit c [atpH]. 10 75 IPR000454 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 CDD ATP-synt_F1_alpha_N 183 248 - -
Psa1g0092 655 Pfam ATP synthase alpha/beta family, beta-barrel domain 182 247 IPR004100 GO:0046034|GO:1902600
Psa1g0092 655 CDD ATP-synt_Fo_c_ATPH 4 68 - -
Psa1g0092 655 ProSitePatterns ATP synthase alpha and beta subunits signature. 510 519 IPR020003 GO:0005524
Psa1g0092 655 ProSitePatterns ATP synthase c subunit signature. 40 61 IPR020537 -
Psa1g0092 655 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 304 519 IPR000194 GO:0005524
Psa1g0092 655 Pfam ATP synthase alpha/beta chain, C terminal domain 526 650 IPR000793 GO:0015986
Psa1g0092 655 PANTHER ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC 149 655 - -
Psa1g0092 655 SUPERFAMILY F1F0 ATP synthase subunit C 3 69 IPR035921 -
Psa1g0092 655 Pfam ATP synthase subunit C 11 68 IPR002379 GO:0015078|GO:0033177|GO:1902600
Psa1g0092 655 Hamap ATP synthase subunit alpha [atpA]. 113 655 IPR005294 GO:0015986|GO:0045261|GO:0046933
Psa1g0092 655 Gene3D F1F0 ATP synthase subunit C 1 74 IPR038662 -
Psa1g0092 655 TIGRFAM ATP_synt_c: ATP synthase F0, C subunit 20 70 IPR005953 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 Coils Coil 74 108 - -
Psa1g0092 655 CDD F1_ATPase_alpha 249 522 IPR033732 GO:0032559
Psa1g0092 655 Gene3D - 527 655 IPR038376 -
Psa1g0092 655 PRINTS ATP synthase C subunit signature 12 31 IPR000454 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 PRINTS ATP synthase C subunit signature 33 48 IPR000454 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 PRINTS ATP synthase C subunit signature 50 75 IPR000454 GO:0015078|GO:0015986|GO:0045263
Psa1g0092 655 TIGRFAM atpA: ATP synthase F1, alpha subunit 181 651 IPR005294 GO:0015986|GO:0045261|GO:0046933
Psa1g0092 655 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 149 655 - -
Psa1g0092 655 Gene3D - 181 248 IPR023366 -
Psa1g0092 655 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 181 249 IPR036121 GO:0046034|GO:1902600
Psa1g0092 655 Gene3D - 249 526 IPR027417 -
Psa1g0092 655 CDD ATP-synt_F1_alpha_C 530 655 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0092 Psa-Chr1 5506510 5510021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0092 241 525 Primary Pumps ATPases(2) AT4G38510 30.464 9.98e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0092 K02111 - gmx:3989298 843.573