Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0053 ATGACCTGTTTCCCTTTCTCATTCAAGAAGACGTCGACTATTTCGAAACATAATCTAGACAACGACGAAGATATTTCGGGCATTCATAATGTTAAAATCTATACCTATAAAGAACTAAGAAAGGCGACGGATGACTTTAGTCAGGCCAATAAAATCGGAGAGGGTGGTTTCGGTTCTGTCTACATGGGTCGTCTTAAAGGGGGAAAACTTGCTGCTATAAAAGTTCTTTCGGCCGAATCAAGACAAGGGGTGAAGGAATTCTTGACGGAGATTAATGTGATCTCCGAAATCCAGCATGAAAATTTGGTTAAGTTATATGGTTGTTGTGTGGAAAGAAACAACAGGATATTAGTCTACAATTACCTTGAGAATAACAGTCTTTCGCGAACTCTTCTAGGTGGAAGTCACAATAGTATCTACTTTGATTGGGGAACACGGTGTAGAATATGTGTTGGTGTTGCAAGCGGACTCGCATTTCTTCATGAAGAAGTTAGGCCTCCTATCATTCATAGGGATATAAAAGCAAGCAATATTCTTCTTGATAAAGATCTTACACCCAAGATTTCCGATTTTGGTCTTGCAAAGCTTATGCCTGCAAACGCAACTCATGTCAGCACGCGTGTAGCAGGAACATTAGGTTATTTGGCACCAGAGTATGCAATCGGAGGAAGACTTACACGAAAAGCGGACATTTACAGTTTCGGTGTCCTCCTTGTGGAGATTGTCAGTGGAAGATGTAACACGAATTCGCGACTTCCAATAGAAGAACAATTCATTCTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAACTAGTTGCACTGGTAGATACATCGCTAAACGGAGAATTTGACGCCGAGCAGGCCTGTAAATTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCTCCAAAGTGTCGTCCGTCCATGTCTTCTGTGGTCAAGATGCTTACCGGAGAAATGGATGTTAATGACAGTACGCTGACAAAACCGGCTTTAATTTCCGATTTTATGGACCTCAAAGTCAGAAAGAATCAAGAAAGTACTACAATGGATTTGAAGACTTCATCTTCTTCATACAATACATTCTCTACCTCGGAGCAACAGGACTCTACCATTACATCAGCTGCAACTGCACAATATGATCACAGCATGTAA 1158 0.4128 MTCFPFSFKKTSTISKHNLDNDEDISGIHNVKIYTYKELRKATDDFSQANKIGEGGFGSVYMGRLKGGKLAAIKVLSAESRQGVKEFLTEINVISEIQHENLVKLYGCCVERNNRILVYNYLENNSLSRTLLGGSHNSIYFDWGTRCRICVGVASGLAFLHEEVRPPIIHRDIKASNILLDKDLTPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFILERTWELYERKELVALVDTSLNGEFDAEQACKFLKIGLLCTQESPKCRPSMSSVVKMLTGEMDVNDSTLTKPALISDFMDLKVRKNQESTTMDLKTSSSSYNTFSTSEQQDSTITSAATAQYDHSM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0053 385 Pfam Protein kinase domain 47 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0053 385 PANTHER - 2 377 - -
Psa1g0053 385 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Psa1g0053 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Psa1g0053 385 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Psa1g0053 385 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0053 385 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Psa1g0053 385 MobiDBLite consensus disorder prediction 353 385 - -
Psa1g0053 385 ProSiteProfiles Protein kinase domain profile. 46 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0053 385 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Psa1g0053 385 CDD STKc_IRAK 52 319 - -
Psa1g0053 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0053 Psa-Chr1 3300875 3303380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0053 8 385 Receptor kinase-like Gene Family AT1G53430 46.457 1.74e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g0053 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0053 - - gmx:100782320 616.305