Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0046 ATGGCTGCTGCGGTTGTTTCTGGTGACATTTCAACTGATGCCAACAAAATGGACTCAAAACCAAAAGCTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACGAAGCTGAATCCTCTGGCTAAGGAGTTTTTTCCTTCATCTTATGGTCCTAGCAATGATCATCGTCGTCAGGGGTATAATATCGTGAGACCAAACAATTTTTTGGTCAACACTAAGGCATCACCTAATGATGATCATCATAACAATCGAAGGAGAAGAAACAACTTTACTCAAGGGAGGAGAAGGTTGAACGGAAGGTCGCTGAAGGCTCAGAGAGAAGACAGCGTTAGGAGAACAGTTTATGTTTCTGATATCGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAACTGTGGACAAGTGATTGATTGCCGAATCTGTGGTGATCCACATTCAGTTCTTCGATTTGCTTTTGTCGAGTTTGCTGATGAGCATGGTGCAAGGGCAGCTCTAACCCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTCCTACCTTCCAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAACATTGACAAGAAGATTTCTCAAGCTGAAGTGAAGAGTTTTTTTGAGTCATCCTGTGGGGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATAGCAGAAAGTGCCATCCTTGCACTAAACTGTAGCGGCATGCTCTTGGGAACCCAGCAAATCAGGGTAAGTCCTTCCAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGTATCGCGTTAA 903 0.4574 MAAAVVSGDISTDANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYGPSNDHRRQGYNIVRPNNFLVNTKASPNDDHHNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALTLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKSFFESSCGGEVTRLRLLGDQVHSTRIAFVEFAIAESAILALNCSGMLLGTQQIRVSPSKTPVRPRVTRPVSR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0046 300 MobiDBLite consensus disorder prediction 74 106 - -
Psa1g0046 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Psa1g0046 300 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g0046 300 CDD RRM1_CID8_like 112 191 IPR034823 -
Psa1g0046 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Psa1g0046 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 15 299 - -
Psa1g0046 300 SUPERFAMILY RNA-binding domain, RBD 78 190 IPR035979 GO:0003676
Psa1g0046 300 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
Psa1g0046 300 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 15 299 - -
Psa1g0046 300 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Psa1g0046 300 Gene3D - 199 294 IPR012677 -
Psa1g0046 300 Gene3D - 71 190 IPR012677 -
Psa1g0046 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Psa1g0046 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Psa1g0046 300 SMART rrm1_1 212 284 IPR000504 GO:0003723
Psa1g0046 300 SMART rrm1_1 115 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0046 Psa-Chr1 3108578 3114224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0046 115 283 Eukaryotic Initiation Factors Gene Family AT1G71770 28.902 2.05e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0046 - - gmx:100779109 463.381