Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0032 ATGACAAACATGGGTATGAGTGTAGATCGTGATCAATTTTTCAATGCCGATTTCATGTGGGAAAATCAACCCTGGGGTGATCATACAAATTCAGAAAGCATAGGTGAGAGTAGCAAACAAAAGTTAGATAATAAACCAATGAATAAAAAAGAAGGTATTAATGAAGGAGAAGTTCTCGTGAATAGAAAACGAGATCGAGGTGGAGTTGTGATTAGAACAGAGAATAACATTATAAATGCGAAAGACAAAGATGAAAAGTACCGCAACTCTGATAAGAAAATGCATATATTGACCGAGAGAGAAAGGAGAAAGAAAATGAAGAATATGTTCGCCAACCTTCATGCCTTACTTCCTAAATTGCCTTCTAAGGCTGATAAAGCCTCAATTATAGATGCGGCAGTGATAGAAATTAGCAATTTAAAAGAAGTTGTTGAACAACTAGAAAAAATGAAGCAGGAAAAGCTTAAATTTGTATCCAAATTTGGAACTAAGTCATCATTTGAGAGGAACTCACACTGGCATCCTCATGAATCAAGGGAAGCAACTGTAAATGTTCAAAGATCCTTAAGTTATAATAATAACTTTCCTACTTATGCAATAGAGTCTTCACCAAAACAAGTAGCTTTTCAAACATGGTCTACTCAAAATGTTGTCTTGAGCATTTGTGGCGCTGAAGCACAATTTTGCATCTGTACAACTAAGAAGTCGTGTCTCTTAACAACAATTGCTTCTATGTTGGAGAACTATATGATTGATGTTGTATCTGCAAACATTAACTTCAATGAATATGGACATTTCTATCTAATTCAAATTCAAGCAAAACAACGTTCACATGACACAAATTCAATGGAGGAAACTTACAAGCAAGTGGCTACAGAAATTCTAACGTGGATCTCTTAA 900 0.3489 MTNMGMSVDRDQFFNADFMWENQPWGDHTNSESIGESSKQKLDNKPMNKKEGINEGEVLVNRKRDRGGVVIRTENNIINAKDKDEKYRNSDKKMHILTERERRKKMKNMFANLHALLPKLPSKADKASIIDAAVIEISNLKEVVEQLEKMKQEKLKFVSKFGTKSSFERNSHWHPHESREATVNVQRSLSYNNNFPTYAIESSPKQVAFQTWSTQNVVLSICGAEAQFCICTTKKSCLLTTIASMLENYMIDVVSANINFNEYGHFYLIQIQAKQRSHDTNSMEETYKQVATEILTWIS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0032 299 Pfam Helix-loop-helix DNA-binding domain 92 140 IPR011598 GO:0046983
Psa1g0032 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 153 IPR036638 GO:0046983
Psa1g0032 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 140 IPR011598 GO:0046983
Psa1g0032 299 Coils Coil 130 160 - -
Psa1g0032 299 SMART finulus 96 146 IPR011598 GO:0046983
Psa1g0032 299 PANTHER - 11 297 IPR044278 GO:0003700|GO:0006355|GO:0009960
Psa1g0032 299 Gene3D - 80 156 IPR036638 GO:0046983
Psa1g0032 299 CDD bHLH_AtbHLH_like 95 148 IPR045239 -
Psa1g0032 299 PANTHER TRANSCRIPTION FACTOR BHLH95 11 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0032 Psa-Chr1 1549039 1551410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0032 25 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 31.013 3.11e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g0032 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0032 - - mtr:MTR_4g085700 342.813