Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0020 ATGGGGAGAGGAAAGATTGAGATAAAAAGAATTGAGAATACAACAAATAGGCAAGTGACTTTCTGCAAGAGAAGAAACGGGCTTTTGAAAAAAGCTTATGAATTATCAGTTTTGTGTGATGCAGAAGTTGCTCTGATTGTCTTCTCGAGCCGTGGAAGACTTTATGAGTATTCAAACAACAACATTAGGTCAACAATTGATAGGTACAAGAAAGCATGTTCAGATCATTCAAATACCACAACTACCACTGAAATTAACGCTCAGTATTATCAGCAAGAATCTGCAAAACTGCGACAACAGATACAGATGCTGCAAAATTCTAACAGGCATTTGATGGGTGATGCTTTAAGCACATTGACTGTGAAAGAGCTTAAGCAGCTTGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATAAGTGAGGTTGAAAGGCTTCCTCAAGTAAACATGGTTTCTGGACAAGAACTGAATGCAATTCAAGCATTAGCATCTCGTAATTTCTTCAATCCAAACATGATGGAAGATGGAACTTCTTACAATCAATCATCAGATAAGAAGATTCTTCATCTTGGGTGA 672 0.372 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSNTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKISEVERLPQVNMVSGQELNAIQALASRNFFNPNMMEDGTSYNQSSDKKILHLG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0020 223 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Psa1g0020 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Psa1g0020 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
Psa1g0020 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g0020 223 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Psa1g0020 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Psa1g0020 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa1g0020 223 Coils Coil 87 107 - -
Psa1g0020 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g0020 223 Coils Coil 124 144 - -
Psa1g0020 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0020 Psa-Chr1 309381 314242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0020 1 223 MADS-box Gene Family AT4G09960 74.783 2.64e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa1g0020 K-box 8.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0020 K09264 - gmx:100301905 405.986