Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0017 ATGTCAAGTAAAGTTTCAACACTTTTTGCAACAATGAAGCTTCACCGGAGAAGGTGTGTCCGGCCAACGTCGCCGGAAAAGGAATCAAAGCATTTTATGAAAGCCATACTTCCCTCCCCCATTCATTCCAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAACGATGCTGCTACAATTACTGTTCCCGACGGTCGTGTTTGGGAAATGGAACTCAAGAAATGTGGTAACGAGGTTTACTTTTGCAACAAATGGCAAGAGTTTGCAGAATACTATTGTATAGGATATGGTTGCTACTTGAGTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTGTTATATTTGATGCAACTTCTGTTGAGATTTCCTACTCATTCAAAACAAACACAAAGAAAAGATTCAAGGTTGAAAAAAATGAGAATGGTGGTAAACAGGTGAAGATCATGTCTAATTCTGATTCGGAGAGATCAGAGGATGGTGCGAATGAATTCAACCCAAAGAAGCCTTATTTTCGTTCCAAAATGAATAAGGGAAATAATGCGTATGTTAGTGCTGATTTTGCTTCAAAGTATCTCAAGTCAAATGTTCCTATGAAGCTGCAAAATTGTCATGGAGAGCAGTGGGAAGTTTATGCCAAATCATGGGGAAAAATGCAAATATCGAGAGGGTTTTCTAAGTTTAAAAGGGACAATAATATATCAGAGGGAGATATTTGTGTGTTTGAGCTGATCAAGGAGAATCCGGTTGTGCTAAAAGTCACAGTGTTTCCACCACTTCACTATGGTGATTAA 810 0.3778 MSSKVSTLFATMKLHRRRCVRPTSPEKESKHFMKAILPSPIHSKQIRIPDEFITRFGNELNDAATITVPDGRVWEMELKKCGNEVYFCNKWQEFAEYYCIGYGCYLSFKYEGNSKFSVVIFDATSVEISYSFKTNTKKRFKVEKNENGGKQVKIMSNSDSERSEDGANEFNPKKPYFRSKMNKGNNAYVSADFASKYLKSNVPMKLQNCHGEQWEVYAKSWGKMQISRGFSKFKRDNNISEGDICVFELIKENPVVLKVTVFPPLHYGD* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0017 269 Pfam B3 DNA binding domain 176 262 IPR003340 GO:0003677
Psa1g0017 269 Pfam B3 DNA binding domain 32 123 IPR003340 GO:0003677
Psa1g0017 269 Gene3D - 154 265 IPR015300 -
Psa1g0017 269 SMART B3_2 172 265 IPR003340 GO:0003677
Psa1g0017 269 SMART B3_2 32 124 IPR003340 GO:0003677
Psa1g0017 269 SUPERFAMILY DNA-binding pseudobarrel domain 170 262 IPR015300 -
Psa1g0017 269 CDD B3_DNA 175 263 IPR003340 GO:0003677
Psa1g0017 269 Gene3D - 23 125 IPR015300 -
Psa1g0017 269 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 142 262 - -
Psa1g0017 269 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 26 143 - -
Psa1g0017 269 SUPERFAMILY DNA-binding pseudobarrel domain 27 123 IPR015300 -
Psa1g0017 269 CDD B3_DNA 30 122 IPR003340 GO:0003677
Psa1g0017 269 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Psa1g0017 269 ProSiteProfiles B3 DNA-binding domain profile. 172 265 IPR003340 GO:0003677
Psa1g0017 269 PANTHER B3 DOMAIN-CONTAINING 26 143 - -
Psa1g0017 269 PANTHER B3 DOMAIN-CONTAINING 142 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0017 Psa-Chr1 256326 257893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0017 146 262 B3 DNA Binding Superfamily AT3G18990 32.520 3.77e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa1g0017 B3 2.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0017 - - mtr:MTR_5g070440 362.844