Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0016 ATGCACCGTTGCCGGAGAAAGACTTTTCGGCCATCGGCGCCGGAGATGGAATCAAAGCATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCCAAACAAATTAGAATTCCAGAAGAGTTTATAACAAGATTTGGGAATGAACTCAACAATGTTGCTACAATTACTGTTCCAGATGGTCGTGTTTGGGAAATGGAACTCAAGAAATGTGGTAAAGAGGTTTACTTTTGCAAAAAATGGCAAGAGTTTGCAGAATACTATTGTATAGGATATGGTTGCTATCTGTGTTTCAAATATGAGGGAAAATCAAAGTTTAGTGTTGTTATATTTGATATCACTTCTGTTGAGATTTCATACCCTCCAAGTACTCATGGAGAAATAACCATTAAGTGTCCTAGTCATAGGAAAAGTTCCAAGGTTGAAACAATTGGAGTTCAAAGCATGTCTAACACTGCTTCTAAGAGAGCAGAACATGCTGCCAATGAATTCAACTCAAGCAGGCCTCATTTTCTATCCAAAATCAATAAGGGAAAAAATGTGTATGTTGCTGCTGATTTTGCTGCAAAGTATCTGAAGCCAAATGTTCCTATGAAGCTCCAAAATTGTCATGGAGAGCAGTGGGAAGTTTTTGGCATGTTGCATGATGTCAGATTATCTTTAGCTTTGCAAATAAGGAGAGGATTTTCTAAATTTCAAAGGGATAACAGTCTGTCAGAGGGAGATATTTGTGTGTTTGAGCTTATCAACGAGAAGCCCGTTGTGCTAAATGTCGCAATGTTTCGCGCAGTTGACTATGGTGATTAA 804 0.3843 MHRCRRKTFRPSAPEMESKHFMKAILPSPIHAKQIRIPEEFITRFGNELNNVATITVPDGRVWEMELKKCGKEVYFCKKWQEFAEYYCIGYGCYLCFKYEGKSKFSVVIFDITSVEISYPPSTHGEITIKCPSHRKSSKVETIGVQSMSNTASKRAEHAANEFNSSRPHFLSKINKGKNVYVAADFAAKYLKPNVPMKLQNCHGEQWEVFGMLHDVRLSLALQIRRGFSKFQRDNSLSEGDICVFELINEKPVVLNVAMFRAVDYGD* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0016 267 CDD B3_DNA 172 261 IPR003340 GO:0003677
Psa1g0016 267 SMART B3_2 21 113 IPR003340 GO:0003677
Psa1g0016 267 SMART B3_2 170 263 IPR003340 GO:0003677
Psa1g0016 267 SUPERFAMILY DNA-binding pseudobarrel domain 163 261 IPR015300 -
Psa1g0016 267 CDD B3_DNA 19 111 IPR003340 GO:0003677
Psa1g0016 267 PANTHER B3 DOMAIN-CONTAINING 148 262 - -
Psa1g0016 267 PANTHER B3 DOMAIN-CONTAINING 16 140 - -
Psa1g0016 267 ProSiteProfiles B3 DNA-binding domain profile. 197 263 IPR003340 GO:0003677
Psa1g0016 267 Gene3D - 12 114 IPR015300 -
Psa1g0016 267 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Psa1g0016 267 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 140 - -
Psa1g0016 267 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 148 262 - -
Psa1g0016 267 Gene3D - 148 266 IPR015300 -
Psa1g0016 267 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677
Psa1g0016 267 Pfam B3 DNA binding domain 175 262 IPR003340 GO:0003677
Psa1g0016 267 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0016 Psa-Chr1 244700 246646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0016 146 264 B3 DNA Binding Superfamily AT3G18990 29.839 6.65e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa1g0016 B3 7.3e-09 CL0405