Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0015 ATGTGTAGTAACACTTACAACTTTTTCATGGCAAATGCAATGCACTCTCACCACTTCATGAAAGCCATACTTCCCTCTCCCATTCATTCCAAACAACTCAGAATTCCAGATGAATTCATATCAACATTCGGCAATCAACTCCAGAATGTTGTTACTCTTACTGTTCCAGATGGTCGCCAATGGAATATACAACTCAACAAATGCCACAACAATGGCGTTTTCCTTACCAACAAATGGAAACAGTTCTCTCAACACTATTCTCTTCGTTATGGTTACTATTTAGATTTCAACTATCAAGGAAACTCTAACTTCAATGTTGTTATATATGATACAACTTCCCTTGAGATTTCATATCCACTCACTGCTTCCAATGAAGGCAACCCTTCTTTTTGCTCTAAATCCATCAAGGGACGCTATGCGTATATTAGTGCTGATTTTGCTGCAAAATATCTCAAGCTAAATGTTCCTATCAAACTCCAAAATTCTCAAGGAAAGCAATGGCAAGTTTCTTGTTCAACACAGGTAGTGAATTCAACAGCCATGCGATTATCTGCTGGATTCAGTAAATTTGCAAAGGAAAATAATTTATCAGAAGGAGTTACTTATGTATTTGAGCTGATCAAAAAAGAGCCTGTTCTTGTGCTACTAGTTACAGCATTTCACAAGACTCGCCGAGGAAGGCGTGTACTATCGGCGAAGGAAGCGGAAGTTATGGAATTGAAGCATTTTAAGAAGGCCATACTTCCCTCGCCCATTCATGCCAAACAAATAAGAATTCCGAATGAATTTGTAACAAGATTTGGGAAAGAATTGGGGAACGTTGCTGAAATTACTGTGCCAGATGGTTCTGTTTGGGAAATGAAACTTAAGAAACGGAACGAAAACATTTTCTTAACCACCAAATGGCAAGAGTTTGCAGAATACTATTCTATAGAATATGGTTGCTACCTGTCATTCAAATATGAAGGGGATTCTAAGTTTAGTGTTGTTATATTTGATGCAACTTCTGTTGAGATATGCTATCCACTCAAAACTCCATGTACTAATGAAGAACAGAACAAAAGGTGTGTTACTGATAGGAAAATGTCTGAGGCTGAAACAATTGAGAGTCATGGGAAACATGTCAAAAGCATGTATGAACATGCTTACGAAAGAGCTGAGGTTGCTGCCAATGAATACAATCCAAAAAACCCTTTTTTTCGATCAAAAGTCTGTAAAGGAAGATATCCGTACGCTCCTTCTGATTTTGCTAAAAAGTATCTGAAGCCAGATGTTCCTATCAAGCTTCAAAATGCTGATGGTGAGCAATGGGAAGTTTGTTGTGCATTCAATATGTCAAACTCAATGGCAATGCGAATAGTGAAGGGATATTGTGAGTTTCATACAAACAACAACCTGTCAGAGGGAGATCATTGTGTGTTTGAGGTGATCAAGGAGATGCCGGTTGTGCTAAAAGTCACAATATTTCGCACGGTTGACTTTGCTGATTAA 1491 0.3816 MCSNTYNFFMANAMHSHHFMKAILPSPIHSKQLRIPDEFISTFGNQLQNVVTLTVPDGRQWNIQLNKCHNNGVFLTNKWKQFSQHYSLRYGYYLDFNYQGNSNFNVVIYDTTSLEISYPLTASNEGNPSFCSKSIKGRYAYISADFAAKYLKLNVPIKLQNSQGKQWQVSCSTQVVNSTAMRLSAGFSKFAKENNLSEGVTYVFELIKKEPVLVLLVTAFHKTRRGRRVLSAKEAEVMELKHFKKAILPSPIHAKQIRIPNEFVTRFGKELGNVAEITVPDGSVWEMKLKKRNENIFLTTKWQEFAEYYSIEYGCYLSFKYEGDSKFSVVIFDATSVEICYPLKTPCTNEEQNKRCVTDRKMSEAETIESHGKHVKSMYEHAYERAEVAANEYNPKNPFFRSKVCKGRYPYAPSDFAKKYLKPDVPIKLQNADGEQWEVCCAFNMSNSMAMRIVKGYCEFHTNNNLSEGDHCVFEVIKEMPVVLKVTIFRTVDFAD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0015 496 Pfam B3 DNA binding domain 135 212 IPR003340 GO:0003677
Psa1g0015 496 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Psa1g0015 496 Pfam B3 DNA binding domain 404 491 IPR003340 GO:0003677
Psa1g0015 496 Pfam B3 DNA binding domain 245 334 IPR003340 GO:0003677
Psa1g0015 496 ProSiteProfiles B3 DNA-binding domain profile. 18 112 IPR003340 GO:0003677
Psa1g0015 496 ProSiteProfiles B3 DNA-binding domain profile. 157 220 IPR003340 GO:0003677
Psa1g0015 496 SUPERFAMILY DNA-binding pseudobarrel domain 137 219 IPR015300 -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING 14 123 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING 124 221 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING 237 364 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING 361 491 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 361 491 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 14 123 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 237 364 - -
Psa1g0015 496 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 124 221 - -
Psa1g0015 496 ProSiteProfiles B3 DNA-binding domain profile. 427 492 IPR003340 GO:0003677
Psa1g0015 496 CDD B3_DNA 241 333 IPR003340 GO:0003677
Psa1g0015 496 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Psa1g0015 496 SMART B3_2 243 335 IPR003340 GO:0003677
Psa1g0015 496 SMART B3_2 130 223 IPR003340 GO:0003677
Psa1g0015 496 SMART B3_2 19 112 IPR003340 GO:0003677
Psa1g0015 496 SMART B3_2 399 492 IPR003340 GO:0003677
Psa1g0015 496 Gene3D - 120 224 IPR015300 -
Psa1g0015 496 Gene3D - 378 495 IPR015300 -
Psa1g0015 496 CDD B3_DNA 413 490 IPR003340 GO:0003677
Psa1g0015 496 CDD B3_DNA 17 110 IPR003340 GO:0003677
Psa1g0015 496 Gene3D - 236 336 IPR015300 -
Psa1g0015 496 Gene3D - 10 113 IPR015300 -
Psa1g0015 496 SUPERFAMILY DNA-binding pseudobarrel domain 393 490 IPR015300 -
Psa1g0015 496 SUPERFAMILY DNA-binding pseudobarrel domain 240 334 IPR015300 -
Psa1g0015 496 ProSiteProfiles B3 DNA-binding domain profile. 242 335 IPR003340 GO:0003677
Psa1g0015 496 CDD B3_DNA 141 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0015 Psa-Chr1 241241 243368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0015 369 496 B3 DNA Binding Superfamily AT3G18990 38.806 3.85e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa1g0015 B3 1.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0015 - - mtr:MTR_3g005420 601.282