Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prciun49133g0084 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAAAAATATAGTAATAATTTGATTCTTCGTCGCCGTAGTAAATAG 828 0.4336 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRKKYSNNLILRRRSK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prciun49133g0084 275 NCBIfam 50S ribosomal protein L2 3 274 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Prciun49133g0084 275 Hamap 50S ribosomal protein L2 [rplB]. 1 274 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Prciun49133g0084 275 MobiDBLite consensus disorder prediction 225 275 - -
Prciun49133g0084 275 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 275 IPR002171 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 ProSitePatterns Ribosomal protein L2 signature. 217 228 IPR022671 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 Gene3D - 116 194 IPR014722 -
Prciun49133g0084 275 PANTHER RIBOSOMAL PROTEIN L2 36 274 IPR002171 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 MobiDBLite consensus disorder prediction 255 275 - -
Prciun49133g0084 275 FunFam 50S ribosomal protein L2, chloroplastic 116 195 - -
Prciun49133g0084 275 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Prciun49133g0084 275 SMART Ribosomal_L2_C_2 122 252 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 Gene3D - 1 112 IPR012340 -
Prciun49133g0084 275 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Prciun49133g0084 275 Pfam Ribosomal Proteins L2, C-terminal domain 123 250 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 SUPERFAMILY Translation proteins SH3-like domain 124 272 IPR008991 -
Prciun49133g0084 275 FunFam 50S ribosomal protein L2 195 275 - -
Prciun49133g0084 275 MobiDBLite consensus disorder prediction 1 25 - -
Prciun49133g0084 275 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0084 275 Gene3D Ribosomal protein L2, domain 3 195 274 IPR014726 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prciun49133g0084 51 234 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 35.500 2.12e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prciun49133g0084 K02886 - zju:27963891 540.421