Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prciun49133g0045 ATGCCAACTATTAAACAACTTATTAGAAACACAAGACAGCCAATCCGAAATGTCACGAAATCCCCCGCCCTTCGGGGATGCCCTCAGCGCCGAGGAACATGTACTAGGGTGTATACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTATGGGGTCAAAAAGCCAAAATAAATGA 372 0.4409 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSMGSKSQNK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prciun49133g0045 123 CDD Ribosomal_S12 3 110 IPR005679 GO:0003735|GO:0006412|GO:0015935
Prciun49133g0045 123 NCBIfam 30S ribosomal protein S12 1 118 IPR005679 GO:0003735|GO:0006412|GO:0015935
Prciun49133g0045 123 SUPERFAMILY Nucleic acid-binding proteins 2 116 IPR012340 -
Prciun49133g0045 123 Pfam Ribosomal protein S12/S23 13 118 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 Hamap 30S ribosomal protein S12 [rpsL]. 1 123 IPR005679 GO:0003735|GO:0006412|GO:0015935
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 27 42 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 42 57 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 77 94 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 58 77 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 94 110 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PRINTS Ribosomal protein S12 signature 110 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 FunFam 30S ribosomal protein S12, chloroplastic 1 123 - -
Prciun49133g0045 123 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 1 123 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 ProSitePatterns Ribosomal protein S12 signature. 43 50 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 12 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
Prciun49133g0045 123 Gene3D - 1 123 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prciun49133g0045 17 99 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 38.462 7.70e-10 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prciun49133g0045 K02950 - cave:30215303 239.58