Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2417 ATGGATTTTGGTTTGATTTTATGCCTCGATCTTTTCAGAAATTATGCCAATTCATTCCTATCTCAATACGAACCAATCGTTCTGCTTCTCTCTCCTCTGCTCACTGTCCTTCTCGCCAGCACAATTCGATCGTTTTTTCATCTCGTGCACGATAAAGGACTTAAACCTACTCTTCTGGGGCTACTCATCAACTCAATCAAATTGATCCCTGGTGTGAAGAGTTACATCAATGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAGTATGACCGTAAATCTAAAAGGGAAGGTTGGAGAACAGAGTTACCAAGGGTAGGACTAGGGATGGAAGTTCTGGAGAAAATGAGAGATGAGAAGAGAAATGATGTGATTTGGCAAGGCAGATGCTCTGGTACAGTCTACATCGGAGGAAGTGAATTTGATGCACACTTTTCTTTGATAAATGAGGCATGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTTCAAAGTGTTGCACACTTTGAGGCAGAAGTGGTTGCAATGACCGCTGCACTTCTTGGAGGCAAAGAAAAGAGTTCAGGGGGACAAATTTGTGGAAATATGACATCGGGAGGGACTGAAAGTATATTATTAGCTGTCAAATCATCACGCGACTATATGAAGTTTAAAAAAGGAATTACAATACCTGAAATGATAATACCTGAGTCTGCACACTCAGCATATGACAAAGCTGCTCAATATTTTAACATCAAACTCTGGCGCATCCCTGTTAACAAAAGATTTCAGGCAGATCCAAAAGCAATTCGACATCATATTAACAAAAATACCATCTTGATTGTTGGTTCTGCCCCTGGATTTCCTCATGGAATAATTGACCCCATTGAAGAACTTGGTAACCTGGCATCAAGCTTCGGAATTTGCTTTCATGTTGACCTCTGTCTTGGTGGCTTTGTATTACCTTTTGCTCGCAAGCTTGGGTACTCCATTCCACCTTTTGACTTTTCTGTTAAAGGAGTTTCTTCAATATCAGTGGACGTGCATAAATATGGTTTAGCTCCTAAAGGAACGAGTATAGTACTATACAGGAACCACGACATCAGAAAGCATCAATTTGTTGCTGTTACTGAGTGGTCTGGTGGGTTGTATGTTTCTCCAACCATGGCTGGAAGCAGGCCTGGAGGTCTTATTGCTGGAGCTTGGGCAGCAATGATGTCCTTAGGAGAAGAAGGTTACCTGGAGAATACAAAAGCAATTATGGATGTTTCGAAAAGAATACAGGAAGGCATAGGTGAGATTCCAGAATTATTCATCGTTGGAAGACCGGATATGACAATTGTGGCTTTTGGATCTGACGTTCTAGACATATTTGAAGTCAATGATATCATGTCATCCAGAGGGTGGCACTTGAATGCATTGCAGAGACCAAACAGCATTCATATCTGTGTGACACTGCAGCATTTGGCGGTTGTTGAAGACTTCCTCAGGGACTTGAAGGACTCTGTGATGACCGTAAAAGAAAATCCTGGTCCAGTAAGTGGAGGGTTAGCACCTATATATGGTGCGGCAGGCAAGATTCCTGATAGAGGTATGGTACAGGAATTGCTGGTAGATATCATGGACGGTACTTGTTAG 1623 0.419 MDFGLILCLDLFRNYANSFLSQYEPIVLLLSPLLTVLLASTIRSFFHLVHDKGLKPTLLGLLINSIKLIPGVKSYINAEKQKVVDKLQYDRKSKREGWRTELPRVGLGMEVLEKMRDEKRNDVIWQGRCSGTVYIGGSEFDAHFSLINEACSMFAHTNPLHLDVFQSVAHFEAEVVAMTAALLGGKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKFKKGITIPEMIIPESAHSAYDKAAQYFNIKLWRIPVNKRFQADPKAIRHHINKNTILIVGSAPGFPHGIIDPIEELGNLASSFGICFHVDLCLGGFVLPFARKLGYSIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHDIRKHQFVAVTEWSGGLYVSPTMAGSRPGGLIAGAWAAMMSLGEEGYLENTKAIMDVSKRIQEGIGEIPELFIVGRPDMTIVAFGSDVLDIFEVNDIMSSRGWHLNALQRPNSIHICVTLQHLAVVEDFLRDLKDSVMTVKENPGPVSGGLAPIYGAAGKIPDRGMVQELLVDIMDGTC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2417 540 SUPERFAMILY PLP-dependent transferases 87 498 IPR015424 -
Prci9g2417 540 Pfam Pyridoxal-dependent decarboxylase conserved domain 155 445 IPR002129 GO:0016830|GO:0019752|GO:0030170
Prci9g2417 540 PANTHER - 40 540 - -
Prci9g2417 540 FunFam Sphingosine-1-phosphate lyase 1 501 539 - -
Prci9g2417 540 FunFam sphingosine-1-phosphate lyase 1 140 404 - -
Prci9g2417 540 Gene3D - 101 537 - -
Prci9g2417 540 Gene3D Aspartate Aminotransferase, domain 1 109 503 IPR015422 GO:0003824
Prci9g2417 540 FunFam Sphingosine-1-phosphate lyase 1 391 503 - -
Prci9g2417 540 Gene3D - 137 404 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2417 Prci-Chr9 33241010 33254813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2417 156 500 Calmodulin-binding Proteins AT3G17760 26.027 4.70e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2417 K01634 - gmx:100794743 919.072