Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2303 ATGTCAGACCTCGATCCGTCCAAGAAAGTGGCCGATAGATATCTCAAACGTGAAGTCCTTGGTGAAGGTACCTATGGAGTAGTATACAAAGCCATTGATACCCAGACAGGACAGACAGTTGCAATTAAGAAAATCCGGCTTGGCAAGCAGAAGGAAGGGGTAAATTTTACAGCCCTTCGAGAGATTAAAATACTTAAAGAGCTCAAAGATCCAAATATTATTGAGTTAATTGATTCTTTCCCACATAAAGGCAATTTGCATCTTGTCTTTGAATTCATGGAGACTGATCTTGAAGCTGTTATAAGAGACCGGAATATCTTTCTTTCACCAGCTGATATAAAATCTTACCTTCAAATGACTCTCCAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCAAACAACTTGCTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCTCGAATCTTTGGGAGCCCAGACCGAAGATTTACTCATCAGGTAAGCAAGATCTTTGTTATATCACAAGAAAGGGGAAAAAAGATTGTCATGGGTTCAAGTGACATCGATCAATTAGGTAAGATTTTTGCAGCATTTGGGACGCCAGCTCCTTCTCAGTGGCTGGATATGGTATACCTACCTGACTATGTTGAGTACCAATATGTTCCTTCCCCGCCTTTTCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATCTATTGTCGAAGATGTTTACCTATGATCCAAGAACTAGAATTTCAGCTGTGCAGGCATTAGACCACAGGTACTTTTCCTCAGCACCTCTGCCCACAGAACCAAGCAAACTTCCTAGACCTGCCCCTAAAAAGGAATCTAAGGTTTCTGATTTCAATCCACATGAGGGTCCTACTGTACTATCACCTCCAAGAAAGTCCAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGAAAATTCATTGCGAGGTGACAATGTTGGTGACTTCAGGCAGACTGCTGGTGATAATACTGGCAAGAGTGAACCAGCACCAATGTCAATAGATTTTTCTATCTTTGGATTGAAATCTCCAAACAGACCTACAATTAACAGTGCTGATAGATCACATTTAAAGAGAAAATTAGATCTAGAATTCCAGCAGCCAGAATGA 1161 0.4091 MSDLDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKILKELKDPNIIELIDSFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLQGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVSKIFVISQERGKKIVMGSSDIDQLGKIFAAFGTPAPSQWLDMVYLPDYVEYQYVPSPPFRSLFPMASDDALDLLSKMFTYDPRTRISAVQALDHRYFSSAPLPTEPSKLPRPAPKKESKVSDFNPHEGPTVLSPPRKSRRVMPGRDGFEENSLRGDNVGDFRQTAGDNTGKSEPAPMSIDFSIFGLKSPNRPTINSADRSHLKRKLDLEFQQPE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2303 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Prci9g2303 386 ProSiteProfiles Protein kinase domain profile. 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g2303 386 FunFam Cyclin-dependent kinase D-1 5 94 - -
Prci9g2303 386 MobiDBLite consensus disorder prediction 369 386 - -
Prci9g2303 386 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Prci9g2303 386 MobiDBLite consensus disorder prediction 311 328 - -
Prci9g2303 386 SMART serkin_6 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g2303 386 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Prci9g2303 386 CDD STKc_CDK7 13 282 IPR037770 GO:0005675|GO:0008353|GO:0070985
Prci9g2303 386 MobiDBLite consensus disorder prediction 272 386 - -
Prci9g2303 386 Gene3D Transferase(Phosphotransferase) domain 1 95 181 - -
Prci9g2303 386 Gene3D Transferase(Phosphotransferase) domain 1 182 285 - -
Prci9g2303 386 SUPERFAMILY Protein kinase-like (PK-like) 10 276 IPR011009 -
Prci9g2303 386 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g2303 386 PANTHER CELL DIVISION PROTEIN KINASE 183 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2303 Prci-Chr9 32499451 32504131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2303 8 383 Core Cell Cycle Gene Families AT1G18040 66.085 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Prci9g2303 Pkinase 4.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2303 K02202 - qsa:O6P43_008518 643.654