LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g2296	ATGGGTATCAAGGATCTCCTCCGATTCATGAAGCCCTATATCGAAACCATTCACATCAACAAATATGCCGGACAACGCGTGGGTATTGATGCTTATTCATGGCTTCATAAGGGAGCTTATTCCTGTAGTATGGAGCTTTGTCTCAATTCTGACACTGAAAAGAAGTTCCAATACATAGAGTACTTTATGCATCGAATCAAGCTACTTCGCTACTATAAGATAACGCCTGTTGTTGTTTTTGATGGCGGCAACGTTCCTTGCAAGGCAGCAACGGAGGAAGATAGGAAGAGAAAACGAAGTGCTAATCGTGATTTGGCAATGGCTAAGCTCAAAGAGGGGAACGTCAATGCAGCCTCGGAGTTATTTCAGAGGGCAGTGAACGTCACTCCCATCATGGCTTATCAACTGATTCAGGTTTTGAGATCAGAGAAAGTTGAGTTTGTTGTAGCTCCATACGAAGCAGATGCTCAGCTAGCATACATGTCCAAGATTAAAACAGGAAAGGGTGGTGTTGTAGCAGTGATCACCGAGGATAGTGACCTAATTGCCTACGGTTGTCCAGCTATTGTCTTTAAGATGGATCGTTATGGGAATGGTGAAAGCATAGAGTTGAACAAGGTTTTTAAAGCAGCGACTTGTAAACCATCCTTCCGAAATTTTGATATGGAACTTTTCACAGGCATGTCTGTCTTAGCTGGCTGTGACTTTCTTCCATCTGTTCCTGGAATTGGTATTGTGCGAGCTCATGCCTTAGTTTCCAAGTATCGGAATTTAGATCGTGTGTTATCTGTTCTCAAGTTGGAGAAGCGCAATCAAATGCCAGAAGATTACGCCAAATCCTTCAAAGAGGCAATTGCAGTCTTCCAGCATGCTCGAATATATGATCCCACTGCTAAGGAGCTCAAGCACCTTATGCCACTTCCACAAAACCTACTTCAGTCCTTTGACGGAAATCTTGATTTTTTGGGACCAGAAATTCCTCAAGTAATAGTTACCTCGATAGCAGAAGGCAACCTAAACCCGTCAACTAAGGAAGCCTTTGATAAGCTCGAACATTCCGGACTTCCTTTGGACCCCATTGTTCTCAAGAGCAATCGTCAACAACTGAAAGTCCAAGTTTCTGCAGCATTTACACAGGAGAGCTCCTTCAAAGTCTTTGGCTCCCATAATGCCAGAGAAAACAGTACAGGCAAGTCATGTGACTTGTGGAAAGATCTCTATCAAATTCGAAGTTGA	1236	0.432	MGIKDLLRFMKPYIETIHINKYAGQRVGIDAYSWLHKGAYSCSMELCLNSDTEKKFQYIEYFMHRIKLLRYYKITPVVVFDGGNVPCKAATEEDRKRKRSANRDLAMAKLKEGNVNAASELFQRAVNVTPIMAYQLIQVLRSEKVEFVVAPYEADAQLAYMSKIKTGKGGVVAVITEDSDLIAYGCPAIVFKMDRYGNGESIELNKVFKAATCKPSFRNFDMELFTGMSVLAGCDFLPSVPGIGIVRAHALVSKYRNLDRVLSVLKLEKRNQMPEDYAKSFKEAIAVFQHARIYDPTAKELKHLMPLPQNLLQSFDGNLDFLGPEIPQVIVTSIAEGNLNPSTKEAFDKLEHSGLPLDPIVLKSNRQQLKVQVSAAFTQESSFKVFGSHNARENSTGKSCDLWKDLYQIRS	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g2296	411	FunFam	Exonuclease 1, putative	1	214	-	-
	Prci9g2296	411	Pfam	XPG I-region	144	235	IPR006086	GO:0004518
	Prci9g2296	411	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	220	349	IPR036279	-
	Prci9g2296	411	Pfam	XPG N-terminal domain	1	100	IPR006085	GO:0004518
	Prci9g2296	411	CDD	H3TH_FEN1-like	223	295	-	-
	Prci9g2296	411	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Prci9g2296	411	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	140	157	IPR006084	-
	Prci9g2296	411	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	76	95	IPR006084	-
	Prci9g2296	411	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	225	240	IPR006084	-
	Prci9g2296	411	SMART	xpgn3	1	102	IPR006085	GO:0004518
	Prci9g2296	411	Gene3D	-	1	213	-	-
	Prci9g2296	411	Gene3D	-	218	291	-	-
	Prci9g2296	411	FunFam	exonuclease 1	218	291	-	-
	Prci9g2296	411	SMART	xpgineu	141	222	IPR006086	GO:0004518
	Prci9g2296	411	CDD	PIN_EXO1	1	209	IPR044752	GO:0046872
	Prci9g2296	411	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	370	IPR006084	-
	Prci9g2296	411	SMART	HhH_4	222	255	IPR008918	GO:0003677\|GO:0003824
	Prci9g2296	411	SUPERFAMILY	PIN domain-like	2	235	IPR029060	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g2296	Prci-Chr9	32471587	32475630	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g2296	1	313	Core DNA Replication Machinery Family	AT5G26680	26.380	1.70e-15	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g2296	K10746		-	gmx:100817932	601.668