Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2259 ATGCAGCACACCTGCCTGGATGGCTTTCAGAACTCTACCACCAAGGCCGGGCAGACCATGGCCCATGCATTGAAAACGGCGTTAGAGATGAGCAACAACGCGCTGGACATAGTGGAAGGGTTCTCGAGTGTCTTGGAGGATTTCAAATTGGAAGACGCAGCCGATGTCGAGAACACGAACGACGTCACAAACAAGAGCAGGAAGCTACTGTCGAGTCCCTTCTCATCGGCTACCTCGGCAGCGGCTGATGATATTCCAACGTGGGTGAACAGCCACCAGAGGAGGCTGTTGCAGGCGGGATCAAAAGCACTGAAGGCGGACGCTGTGGTTGCTCAGGACGGGACCGGCCAGTTCAAGACATTGACGGACGCGCTCAAGACAGTTCCCCCAGACAACAACAAGCCCTTTGTCATACACGTCAAGGCTGGGATATACAAGGAGGAAGTGATCGTAGCCGCAAACACCATGAACTTTGTGACCATCGTCGGAGATGGTCCCACAAAGACCAGGTTCACGGGAGGCAAGTCCCAGAAGGATGGGTTCCAAACTTTCCACACCTCATCTTTCTCGGTGAATGCCAATAACTTCATGGCAATAGACGTAGGGTTCGAGAACACAGCAGGACCGAGTGCAGGGCCAGCGGTGGCGCTCAGGATAACCGGAGACAAGGCAGTGATATACAGGTGCTACATGGACGGACACCAAGACACGCTGTATCCGAGTGCGTATAGGCAGTTCTACAGGGACTGCACGGTGTGGGGGACCATCGACTTCATATTCGGCGATGCAGTGACAGTATTCCAGAACTGCACCATAATGGTGAAGAAGGGTGTGGACGGGCAGGAAGGCGTGGTGGCGGCCGGCGGCAAGAACCAGGAGGCAGGTCCGAGCGCTCTGGTGTTCCAGGGCTGCAAATTCCTTCCGGACCCATCCTATATGGATACCGCCGCCGTGAAGAAGGGGCTGCAGATATCGTATCTGGCAAGGCCATGGAAGCCGTACGCAAAGACGGTGATCATAGAGAGCTATATTCATGAAATCTTCAACCCCAAGGGGTATGTCCCATTCACGGGATCGAACTTTCAGGATACTTGCACGGCTCTGGAGTACGGCAACTTGGGTCCGGGCGGTGATGTTGCCCAGAGGGTGAAATGGCCAGGCGTCGACGCCCACCTGCCGCGTAGCAAGGCTGCTCAGTACTATCCGGGCAGATACTTCCAGCTTTCCAATAATCTGGAAGGCGATTCCTGGATTGTCTCCTCCGGGGTCCCCTACTCCACCGGACCCATGCTCGCCTCGCCCTAG 1305 0.5563 MQHTCLDGFQNSTTKAGQTMAHALKTALEMSNNALDIVEGFSSVLEDFKLEDAADVENTNDVTNKSRKLLSSPFSSATSAAADDIPTWVNSHQRRLLQAGSKALKADAVVAQDGTGQFKTLTDALKTVPPDNNKPFVIHVKAGIYKEEVIVAANTMNFVTIVGDGPTKTRFTGGKSQKDGFQTFHTSSFSVNANNFMAIDVGFENTAGPSAGPAVALRITGDKAVIYRCYMDGHQDTLYPSAYRQFYRDCTVWGTIDFIFGDAVTVFQNCTIMVKKGVDGQEGVVAAGGKNQEAGPSALVFQGCKFLPDPSYMDTAAVKKGLQISYLARPWKPYAKTVIIESYIHEIFNPKGYVPFTGSNFQDTCTALEYGNLGPGGDVAQRVKWPGVDAHLPRSKAAQYYPGRYFQLSNNLEGDSWIVSSGVPYSTGPMLASP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2259 434 SUPERFAMILY Pectin lyase-like 103 427 IPR011050 -
Prci9g2259 434 Pfam Pectinesterase 107 406 IPR000070 GO:0030599|GO:0042545
Prci9g2259 434 ProSitePatterns Pectinesterase signature 1. 132 151 IPR018040 -
Prci9g2259 434 PANTHER PECTINESTERASE 2 418 - -
Prci9g2259 434 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Prci9g2259 434 Gene3D - 104 430 IPR012334 -
Prci9g2259 434 FunFam Pectinesterase 4 104 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2259 Prci-Chr9 32277493 32279118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2259 2 426 Carbohydrate Esterase AT3G06830 43.590 6.25e-115 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2259 K01051 - gmx:100800194 444.121