Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2258 ATGGGTAACGGCGACCCCAATTTCAATGAAGAAGATGCCAGCAGCTATGCTCTCAGCGGCAGGATTATGCTCAGCGCCATCCTCATTTTATTCTTCATAGTCATCCTAATGGTTTGCCTTCACCTTTATGCTCGATGGTTTCATTTACAAGCTCGCCGCCGACATCGCCGGCGCCGCCGCACTCACCTCGTATTCTACGTCGACTCCGCCACTCCCGCCGTGGCCTCGTCGCGCGGTCTCGATTCGTCTCTACTCTCGTCTCTCCCCATCTTTGTATACTCCTCCAAGACCCGTCCCGAGCAGGTTGAATGCGCGGTCTGCTTGTCCGAGTTCGAAGAGGGTGAAACGGGTCGAGTTTTGCCCAAATGCAGTCACAGCTTCCACGTTGACTGCATCGACATGTGGTTCAAGACCCACTCCACGTGCCCCATTTGCAGGGCTGCTGTTGAACCCGAGCCCACTGAAGCCGACAGGCCAGAAGTGGTGATAACTGTGAGCGAACCGGAAATTCCTGAACCAGGGTCGACTTCTGGGCTGTGCTCGGAGTGTCAGAACGAAGGCAGGGATGAAACCCGAAGTGGCCTCACGGTTTGTTCTCCGTCGTCTTCGATTGGGTTCGGGCGGAAGCCATCGTCTCTTGCGGGTGTGACCCTGGAGATGCCCAAGGGGAGCGAGTGCTTCGGGGAGGAGTCGGCTTGCGAGTCGCCGTCGACTCAATCATCTCTCAGGTCGCCGATGAGTCGTATGCTTTCGTTCAAGAGAATGCTTAGCAGAGACCGGAAAGCAAACCTGTCGCCAACGGCAGGGTGTACGGCGGGGGGCAGCAGCTCTGGGATTGAGAAAGAGAAGGATGGGGGAGAACGAAAGGAGTGCCAGTGA 879 0.5666 MGNGDPNFNEEDASSYALSGRIMLSAILILFFIVILMVCLHLYARWFHLQARRRHRRRRRTHLVFYVDSATPAVASSRGLDSSLLSSLPIFVYSSKTRPEQVECAVCLSEFEEGETGRVLPKCSHSFHVDCIDMWFKTHSTCPICRAAVEPEPTEADRPEVVITVSEPEIPEPGSTSGLCSECQNEGRDETRSGLTVCSPSSSIGFGRKPSSLAGVTLEMPKGSECFGEESACESPSTQSSLRSPMSRMLSFKRMLSRDRKANLSPTAGCTAGGSSSGIEKEKDGGERKECQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2258 292 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Prci9g2258 292 SMART ring_2 104 145 IPR001841 -
Prci9g2258 292 SUPERFAMILY RING/U-box 84 152 - -
Prci9g2258 292 FunFam RING-H2 finger protein ATL3 71 151 - -
Prci9g2258 292 MobiDBLite consensus disorder prediction 227 292 - -
Prci9g2258 292 MobiDBLite consensus disorder prediction 177 195 - -
Prci9g2258 292 CDD RING-H2_EL5-like 103 146 - -
Prci9g2258 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 168 - -
Prci9g2258 292 MobiDBLite consensus disorder prediction 231 247 - -
Prci9g2258 292 MobiDBLite consensus disorder prediction 168 195 - -
Prci9g2258 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Prci9g2258 292 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2258 Prci-Chr9 32268697 32270216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2258 5 287 Rapid Response to Elicitors AT3G16720 50.000 4.89e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2258 - - pcin:129320593 556.214