Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2224 ATGGAGAACGTTGGAGGAAGCTCTTCTTCGAATAACGACAACAGTGGAATCAAAGAGCAAGACAGGCTGCTGCCGATAGCGAATGTTGGTCGGATCATGAAGCAGATATTGCCTCAGAACGCCAAGATATCCAAGGAAGCAAAGGAGACCATGCAAGAATGCGTGTCAGAGTTCATAAGCTTCGTCACTAGCGAGGCCTCTGAGAAGTGCCGGAAGGAGAGGAGGAAGACGGTGAATGGGGATGACATATGCTGGGCCCTGGGCACGCTTGGTTTTGACGACTACGCTGACCCACTGAGGAGGTATTTGCACAGATTTAGAGAGTTAGAGGTTGACAGAGCTAATCATGACAGAGGAAATAGCCCTCACGACAGGGATGACATCTATCAAATACCCTCCTCAGGAATCAGCAGGCAGTGA 420 0.4976 MENVGGSSSSNNDNSGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYADPLRRYLHRFRELEVDRANHDRGNSPHDRDDIYQIPSSGISRQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2224 139 Gene3D Histone, subunit A 10 133 IPR009072 GO:0046982
Prci9g2224 139 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Prci9g2224 139 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Prci9g2224 139 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Prci9g2224 139 MobiDBLite consensus disorder prediction 111 125 - -
Prci9g2224 139 FunFam Nuclear transcription factor Y subunit B-3 12 134 - -
Prci9g2224 139 SUPERFAMILY Histone-fold 20 124 IPR009072 GO:0046982
Prci9g2224 139 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci9g2224 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Prci9g2224 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci9g2224 139 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2224 Prci-Chr9 32114030 32115009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2224 17 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.973 1.40e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci9g2224 CBFD_NFYB_HMF 6.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2224 K08065 - gmx:100794513 209.92