Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2182 ATGAAGCGACTTGGCAGCTCGGATTCTTTGGGTGCTCTCCTGCCCATCACAGAAGAACACGGTCCGAGGAACAACAATCGCGCGTACAGAAGGGAGTTCCAATCCATGTTGGACGGGCTGGACGAAGAAGGGTGCGTGGAAGAATTAGGCCTCCCGACGGAGAAGAAACGCCGTCTGAGCGTGGATCAAGTGAAGGCCTTAGAGAAGAACTTCGAAGTAGAGAACAAGCTCGAACCAGAGAGAAAGGTGAAGCTTGCCCAGGAACTCGGATTGCAGCCCAGACAAGTGGCCGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTTCGGCGTCCTCAAAACCAATTATGAAGCTCTCAAACTTAAATACGATGCCCTCCATCAAGACAATGAAGCCATGCTCAGAGAGATTGAGGATTTGAAATCTAGATTGCAAGATGAAGAGAAGAGTGAAGATGTGTCGTTGAATGGAGAGATAAAGCAACCTAAGTCGGAGGAGAAATTAATGGGAGTGGATGTGGAACCTCCTGAAACTGCCATTCCGGAAGTGGAGTCAGAAGACTTGAATTACGAGTGTTTCAGCGGAAACGCAGTCGTAGGAGGCGGCTCCCTCTGCCCCGCGGACTTTAACAAAGACGGCGCTTCAGACAGCGACTCAAGCGCAATCTTGAACGAAGATGGCTCTTGCTCCTTGAAATTCAACTGTTCTTTGTCGTCCTTTCAGTTCCAGAAAACGTGCCAGACTCAGACTCAATATGTGAAGACGGAAGAGCACAACTTCTTCAGCACAGACGAGGCCTGCAATTTCTTCTCGGACGATCAGGCCCCGACCCTCCAGTGGTACTGGAGTTAA 873 0.4983 MKRLGSSDSLGALLPITEEHGPRNNNRAYRREFQSMLDGLDEEGCVEELGLPTEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKTNYEALKLKYDALHQDNEAMLREIEDLKSRLQDEEKSEDVSLNGEIKQPKSEEKLMGVDVEPPETAIPEVESEDLNYECFSGNAVVGGGSLCPADFNKDGASDSDSSAILNEDGSCSLKFNCSLSSFQFQKTCQTQTQYVKTEEHNFFSTDEACNFFSDDQAPTLQWYWS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2182 290 Pfam Homeobox associated leucine zipper 110 152 IPR003106 GO:0006355|GO:0043565
Prci9g2182 290 SMART HOX_1 53 114 IPR001356 GO:0003677
Prci9g2182 290 MobiDBLite consensus disorder prediction 152 172 - -
Prci9g2182 290 SUPERFAMILY Homeodomain-like 48 112 IPR009057 -
Prci9g2182 290 Coils Coil 123 157 - -
Prci9g2182 290 CDD homeodomain 55 111 IPR001356 GO:0003677
Prci9g2182 290 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Prci9g2182 290 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Prci9g2182 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 289 IPR045224 GO:0003700
Prci9g2182 290 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Prci9g2182 290 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Prci9g2182 290 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Prci9g2182 290 FunFam Homeobox-leucine zipper protein HAT5 50 112 - -
Prci9g2182 290 MobiDBLite consensus disorder prediction 1 25 - -
Prci9g2182 290 Gene3D - 53 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2182 Prci-Chr9 31929063 31931180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2182 1 288 Homeobox Transcription Factor Family AT4G40060 46.885 1.63e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci9g2182 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2182 K09338 - qsa:O6P43_030496 372.089