Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2181 ATGAAGCGACTTGGCAGCTCGGATTCTTTGGGTGCTCTCCTGCCCATCACAGAACACGGTCCGAGGAACAACAATCGCGCGTACAGAAGGGAGTTCCAATCCATGTTGGACGGGCTGGACGAAGAAGGGTGCGTGGAAGAATTAGGCCTCCCGACGGAGAAGAAACGCCGTCTGAGCGTGGATCAAGTGAAGGCCTTAGAGAAGAACTTCGAAGTAGAGAACAAGCTCGAACCAGAGAGAAAGGTGAAGCTTGCCCAGGAACTCGGATTGCAGCCCAGACAAGTGGCCGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTTCGGCGTCCTCAAAACCAATTATGAAGCTCTCAAACTTAAATACGATGCCCTCCATCAAGACAATGAAGCCATGCTCAGAGAGATTGAGGATTTGAAATCTAGATTGCAAGATGAAGAGAAGAGTGAAGATGTGTCGTTGAATGGAGAGATAAAGCAACCTAAGTCGGAGGAGAAATTAATGGGAGTGGATGTGGAACCTCCTGAAACTGCCATTCCGGAAGTGGAGTCAGAAGACTTGAATTACGAGTGTTTCAGCGGAAACGCAGTCGTAGGAGGCGGCTCCCTCTGCCCCGCGGACTTTAACAAAGACGGCGCTTCAGACAGCGACTCAAGCGCAATCTTGAACGAAGATGGCTCTTGCTCCTTGAAATTCAACTGTTCTTTGTCGTCCTTTCAGTTCCAGAAAACGTGCCAGACTCAGACTCAATATGTGAAGACGGAAGAGCACAACTTCTTCAGCACAGACGAGGCCTGCAATTTCTTCTCGGACGATCAGGCCCCGACCCTCCAGTGGTACTGGAGTTAA 870 0.4989 MKRLGSSDSLGALLPITEHGPRNNNRAYRREFQSMLDGLDEEGCVEELGLPTEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKTNYEALKLKYDALHQDNEAMLREIEDLKSRLQDEEKSEDVSLNGEIKQPKSEEKLMGVDVEPPETAIPEVESEDLNYECFSGNAVVGGGSLCPADFNKDGASDSDSSAILNEDGSCSLKFNCSLSSFQFQKTCQTQTQYVKTEEHNFFSTDEACNFFSDDQAPTLQWYWS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2181 289 Pfam Homeobox associated leucine zipper 109 151 IPR003106 GO:0006355|GO:0043565
Prci9g2181 289 SMART HOX_1 52 113 IPR001356 GO:0003677
Prci9g2181 289 SUPERFAMILY Homeodomain-like 47 111 IPR009057 -
Prci9g2181 289 MobiDBLite consensus disorder prediction 151 171 - -
Prci9g2181 289 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Prci9g2181 289 FunFam Homeobox-leucine zipper protein HAT5 49 111 - -
Prci9g2181 289 MobiDBLite consensus disorder prediction 1 24 - -
Prci9g2181 289 Coils Coil 122 156 - -
Prci9g2181 289 CDD homeodomain 54 110 IPR001356 GO:0003677
Prci9g2181 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 288 IPR045224 GO:0003700
Prci9g2181 289 Gene3D - 52 116 - -
Prci9g2181 289 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Prci9g2181 289 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Prci9g2181 289 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Prci9g2181 289 Pfam Homeodomain 54 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2181 Prci-Chr9 31929063 31931181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2181 1 287 Homeobox Transcription Factor Family AT4G40060 46.557 1.28e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci9g2181 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2181 K09338 - qsa:O6P43_030496 367.466