Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2166 ATGGAGGACGAGGAGCACGAGGTGTACGGAGGCGAGATCCCTGATGTTGGCGAGATGGAAGGGGACTTGGATTCTCACAATGCCGACGTCGACATGTCAGCTGCCGACGATGAAGCTGTCAAGGAACTGGACGAGATGAAGAAGCGATTGAAGGAGATGGAAGAGGAGGCCGCAGCTCTCCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGAGCGGTTCAAGATCCTGCTAGTGCAGTTGCTTCTCAAGCGAACAAGGAGGAGGTTGATTACGCATGCACACCAGAAGAAGTGCAGCAGCACTTCCAATCATGTGGTACAGTAAACAGAGTCACTATATTGACTGACAAGTATGGCCAACCTAAGGGATTTGCTTATGTGGAATTTCTTGAAACTGAAGCTGTTCAAGAGGCTCTTCTTTTGAATGAATCCGAATTGCATGGCCGTCAGTTGAAGGTTTTACTTAAGAGGACCAACGTTCCTGGCATGAAACAGTATCGTCCTAGGCGTTTCAATCCTTACCTGGCATACCGCTTTAGGAGGCCATATCCTCCTCCTTACTTCTACTCCGCTTATGGATATGGGAAGTTTCCCAGGTTTAGGAGGCCAGGCCGATACATGCCTTACTATTAG 636 0.4953 MEDEEHEVYGGEIPDVGEMEGDLDSHNADVDMSAADDEAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAVASQANKEEVDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLETEAVQEALLLNESELHGRQLKVLLKRTNVPGMKQYRPRRFNPYLAYRFRRPYPPPYFYSAYGYGKFPRFRRPGRYMPYY 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2166 211 CDD RRM_II_PABPs 90 155 - -
Prci9g2166 211 SMART rrm1_1 79 155 IPR000504 GO:0003723
Prci9g2166 211 Coils Coil 36 70 - -
Prci9g2166 211 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 31 169 - -
Prci9g2166 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 153 IPR000504 GO:0003723
Prci9g2166 211 Gene3D - 88 163 IPR012677 -
Prci9g2166 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 159 IPR000504 GO:0003723
Prci9g2166 211 MobiDBLite consensus disorder prediction 1 28 - -
Prci9g2166 211 SUPERFAMILY RNA-binding domain, RBD 91 178 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2166 Prci-Chr9 31837072 31841525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2166 88 156 Eukaryotic Initiation Factors Gene Family AT2G36660 32.857 1.70e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2166 K14396 - mnt:112093523 334.339