Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2159 ATGGGAAGATCACCGTGTTGTGATGAGATTGGTTTGAAGAAAGGCCCTTGGACTCCCGAAGAAGATCAAAAGCTTGTTAACTTCATTCAAGAGCATGGTCACAGGAGCTGGAGAGCTCTTCCAAAACTTGCAGGGCCGAACAGATGCGGGAAAAGTTGCAGGCTACGATGGACGAATTACTTGAGGCCTGACATAAAGAGAGGGAAACTTTCTGAAGAAGAACAGCAAACAATTCTGGATCTCCATGCTATCCTGGGAAACAAATGGTCAGCAATTGCAAGCCAGCTACCAGGACGGACAGATAACGAGATCAAGAATTTCTGGAACACCCATCTAAAGAAGAAGCCGATACAAATGGGTTATGATCCGATGACACACCAACCTCGAACCGATCTTTTCTCAAGTTTGCCTCGTCTCGTAGCATGGGCTAATCTCAAAGGACTTCTGGACCATCAACCATGGAAACAGAGTGCTGCTTTGAAACTGCAAGAAGAGGCTGTTCAATTGATCAGACATCAAGGCTTACAACATATCTTGAAGCCTAAGCGGCCTCGACCTTCTGCAACTGAAGGCAACTTAAACCGTGACTCCACGAACTCGGATTCCATCAATATTAGTCTTCTGAAGTCCCTGGATCTGACGAATAACAACAACACTGTTTTAAGTTCAACCCACTTGGAAGACAATAATGTAAACAATCCATCTCCAGTCGGGGTCAGTAATCTCCAATTCGGCTATGACTCGTTCTCTAACATACCAGAGTTGAAATCGCCTCGTTGCCATCGCCAACCACCGTCGTTAAGTCAGGGAGCAAGTTCTCCCGATTCAGCGTGGCTTCTTTCATGCTCAAGCAGTATTCCATCTCCTTCCACTGCGCCAGAAATTTCAATGACAAATACTGTTATTTATGGAGAGATTGGTCCTTCCATGTGGCCCGACCTCCTGCTGGAGGACCCTTTGTTCCATGAGATTTCCTAG 978 0.4601 MGRSPCCDEIGLKKGPWTPEEDQKLVNFIQEHGHRSWRALPKLAGPNRCGKSCRLRWTNYLRPDIKRGKLSEEEQQTILDLHAILGNKWSAIASQLPGRTDNEIKNFWNTHLKKKPIQMGYDPMTHQPRTDLFSSLPRLVAWANLKGLLDHQPWKQSAALKLQEEAVQLIRHQGLQHILKPKRPRPSATEGNLNRDSTNSDSINISLLKSLDLTNNNNTVLSSTHLEDNNVNNPSPVGVSNLQFGYDSFSNIPELKSPRCHRQPPSLSQGASSPDSAWLLSCSSSIPSPSTAPEISMTNTVIYGEIGPSMWPDLLLEDPLFHEIS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2159 325 FunFam MYB transcription factor 68 129 - -
Prci9g2159 325 SMART sant 13 63 IPR001005 -
Prci9g2159 325 SMART sant 66 114 IPR001005 -
Prci9g2159 325 FunFam MYB-related transcription factor 13 66 - -
Prci9g2159 325 CDD SANT 16 61 IPR001005 -
Prci9g2159 325 Gene3D - 71 115 - -
Prci9g2159 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci9g2159 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci9g2159 325 Gene3D - 13 66 - -
Prci9g2159 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci9g2159 325 MobiDBLite consensus disorder prediction 177 199 - -
Prci9g2159 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Prci9g2159 325 CDD SANT 71 112 IPR001005 -
Prci9g2159 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci9g2159 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci9g2159 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci9g2159 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2159 Prci-Chr9 31780093 31781522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2159 1 324 MYB Transcription Factor Family AT5G10280 45.429 2.02e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci9g2159 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2159 K09422 - qsu:112033310 355.14