Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2111 ATGAAAGCCCTCTCTGATTTCTTCTTTCATCTCTACGCAAAGACCATCGTCCTTTTGGTCTTCTTGCTGATAGAACTCATCATCCTCGTTCGAAGCCTTAAAGCCCACGCTCCTCCAATTACCATATCCCAGTACCTCCAGCTCATTGAAGAGAAAAACCCCACCGTTTGTTTCACCAGAGCACTGAATATGGCAGATGAACCGCAACCAGAGTGCAGCGTGTGCTTATCTGAGCTTCAAGAAGGCGACAAGGTTAGGAACTTGAAATGCAAGCACACATTTCACAAGGAATGCTTGGACCCGTGGTTGCTTCAGTTTTGGGCCACTTGCCCCCTCTGTAGGAACAGAGTAGTACCAGATGATGCTGTGACCAACTATCGACGGCTTCGGAATCAGAGGGAATTGATCATCTTTCCCTTCTGGGATTCCTCGGAAGACTAG 441 0.4785 MKALSDFFFHLYAKTIVLLVFLLIELIILVRSLKAHAPPITISQYLQLIEEKNPTVCFTRALNMADEPQPECSVCLSELQEGDKVRNLKCKHTFHKECLDPWLLQFWATCPLCRNRVVPDDAVTNYRRLRNQRELIIFPFWDSSED 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2111 146 SMART ring_2 72 113 IPR001841 -
Prci9g2111 146 Pfam Ring finger domain 71 114 IPR001841 -
Prci9g2111 146 SUPERFAMILY RING/U-box 53 123 - -
Prci9g2111 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Prci9g2111 146 PANTHER - 1 133 - -
Prci9g2111 146 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2111 Prci-Chr9 31486765 31487924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2111 70 128 C3H Transcription Factor Family AT1G15100 55.932 4.36e-20 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2111 K16282 - qsu:112033407 163.696