Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2108 ATGAATTCAACATCCACACAGTTTGTTTCCACCAGGAGGATGGGTGTATATGATCCTATCCACCAGATTAGCATGTGGGAAGAAAACTTCAAAAGCAATTGTAGTTTAAGTGCATCTATGTCTTTAATTGGTGAGGCAGATGTGAAGTTAGATACTCAGTCAGAGGACTCTTCTCATGGTATTCTCGGAATTCCAAGGAATTATGACCAAGAAGCTAATAAGTCTATTGAAAAGATACAAAGACGCCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTACGGAAAAAGGCTTATGTTCAGCAATTAGAATCAAGTCGTTTGAAGCTGATCAAGTTAGAGCAAGAGCTGGACCGAGCAAGACAGCAGGAAACAAAACTGCAGGGATCTTTTATAGGTTGTAGATTGGATTCTGATAATCTGGTATTTGCTGGATCTGTAAATTCAGGTATTGCAACCTTTGAGATGGAGTATGGGCACTGGGTAGAAAAACAAAATAGACAAATCTGTGAACTGAGAACTGCTTTAAATGCTCATATCAGTGATGTAGAGCTCAGAATACTTGTAGATGGTATAATGAATCACTATTCTGACCTTTTCCGCATGAAATCAGCAGCCGCAAAAGTGGATGTTTTCTATGTTTTGTTTGGCATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATTGGAGGATTCCGCCCATCTGAGCTTCTGAAGGTTCTTGTCCCTTTGATTGAACCCTTGACAGAGCAGCAACGAATGGATGTTTATAACCTTGGACAATCATGCCAGCAAGCAGAAGATGCACTTTCACAAGGTAGGGACAGACTTCAGCAAATTCTTGCTGAAACTGTTGCAGCCGGACAACTGGTTGACGGAACTTACATTCCTCAGATGGCTACTGCAGTGGAGAAGTTGGAAGCTTTGGTGAGCTTTGTGAACCAGAGCAGTCATTTTATGACTTTACATTTAGGAAGAACGATCTCGGAACTAGGAAGGCAGCTATAG 1014 0.4162 MNSTSTQFVSTRRMGVYDPIHQISMWEENFKSNCSLSASMSLIGEADVKLDTQSEDSSHGILGIPRNYDQEANKSIEKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIKLEQELDRARQQETKLQGSFIGCRLDSDNLVFAGSVNSGIATFEMEYGHWVEKQNRQICELRTALNAHISDVELRILVDGIMNHYSDLFRMKSAAAKVDVFYVLFGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRMDVYNLGQSCQQAEDALSQGRDRLQQILAETVAAGQLVDGTYIPQMATAVEKLEALVSFVNQSSHFMTLHLGRTISELGRQL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2108 337 Gene3D - 76 132 - -
Prci9g2108 337 ProSiteProfiles DOG1 domain profile. 152 337 IPR025422 GO:0006351|GO:0043565
Prci9g2108 337 Pfam bZIP transcription factor 78 113 IPR004827 GO:0003700|GO:0006355
Prci9g2108 337 Pfam Seed dormancy control 169 244 IPR025422 GO:0006351|GO:0043565
Prci9g2108 337 SMART brlzneu 74 143 IPR004827 GO:0003700|GO:0006355
Prci9g2108 337 Coils Coil 265 285 - -
Prci9g2108 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Prci9g2108 337 PANTHER TRANSCRIPTION FACTOR TGA9 1 324 - -
Prci9g2108 337 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Prci9g2108 337 Coils Coil 97 131 - -
Prci9g2108 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Prci9g2108 337 FunFam BZIP family transcription factor 77 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2108 Prci-Chr9 31450771 31455800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2108 1 321 Calmodulin-binding Proteins AT5G10030 66.254 1.26e-156 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Prci9g2108 DOG1 5.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2108 K14431 - gmx:100793353 496.123