Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2055 ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTTGAGGAGCAGGAAGATCGAGATTCGACGAAGAAGAAGAAGGAGAGCAGCGAAAAGGGTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGGTAACCTGGATGGTGAGGAAAAGAAGAGCAAGAAGAACAGAAGTGACGAGGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGACAGAGGACGTTCCAGCCGTGAAAAGGAGCCACAGGAGCGGCAGGGAGGGGAAGGGGAGAGAGAGCGGGAGAGGAGTAGTAGAGAGAAGGGGAGAGACAAAGAGTGGGACAAGGATAGGGAGAGGGATAGAGAAAGAAGAGACAAAGAGAGAGAGAGGGACAAAGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGAGAACGAGAACTGGAATTTAGAGATAGCCGGAGATTCAGAGATAAGAAAGAGGCCGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCGTACCAGATGCCCTTAAAGGCCGCAGAGAGAGATGTTTATGATTTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTCCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAAAGCCAGCTGAGGGAAATTTTTGAGCCGTTTGGTCCTGTGGAGCTTGTGCAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGATATTGCTGGTAGGACTATCAAGGTTTCATGTGTAACAGATCATGTCGGGAGCCAAGATACAAGTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTAATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGCAGGGTCCGTTGGTGTGCCTGCTGTGAATGGGTCAGTTTCTGCTCAACAGCCTGTTAGCTTGCCCAGTGCTTCAGGTTTAATGCCTGCACCAGCTCTCCCAACACAAATTATGCCTTCCCCAGTGGCAGAGCCTGTAGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGATCTATGCACATGAGATGGTTTGCACGTAGGTTGATTTCAGCTATTTTCATGCCACCCCAGCTATATGAAGCCAAGTTTAAGGCGGAAGCTTGA 1665 0.4715 MDFDEYDYLEKTVEEQEDRDSTKKKKESSEKGERSYRKREVDGNLDGEEKKSKKNRSDEENGSKKDRDDRDRGRSSREKERXQERQGGEGERERERSSREKGRDKEWDKDRERDRERRDKERERDKERERERERREREERERSRRSRSRSDRDRERERELEFRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKAAERDVYDFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLDIAGRTIKVSCVTDHVGSQDTSAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPAVNGSVSAQQPVSLPSASGLMPAPALPTQIMPSPVAEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKRSAGFVYLRFESVEAASAAQRSMHMRWFARRLISAIFMPPQLYEAKFKAEA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2055 555 Coils Coil 552 555 - -
Prci9g2055 555 Gene3D - 284 380 IPR012677 -
Prci9g2055 555 SMART rrm1_1 289 362 IPR000504 GO:0003723
Prci9g2055 555 SMART rrm1_1 187 259 IPR000504 GO:0003723
Prci9g2055 555 SMART rrm1_1 462 539 IPR000504 GO:0003723
Prci9g2055 555 CDD RRM3_RBM39_like 460 543 - -
Prci9g2055 555 MobiDBLite consensus disorder prediction 1 142 - -
Prci9g2055 555 SUPERFAMILY RNA-binding domain, RBD 288 542 IPR035979 GO:0003676
Prci9g2055 555 Gene3D - 179 273 IPR012677 -
Prci9g2055 555 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 381 479 IPR029123 -
Prci9g2055 555 NCBIfam splicing factor, CC1-like family 70 552 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci9g2055 555 FunFam Splicing factor CC1-like 272 377 - -
Prci9g2055 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 360 IPR000504 GO:0003723
Prci9g2055 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 255 IPR000504 GO:0003723
Prci9g2055 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 484 537 IPR000504 GO:0003723
Prci9g2055 555 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 552 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci9g2055 555 MobiDBLite consensus disorder prediction 12 142 - -
Prci9g2055 555 SUPERFAMILY RNA-binding domain, RBD 179 267 IPR035979 GO:0003676
Prci9g2055 555 Gene3D - 457 555 IPR012677 -
Prci9g2055 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 263 IPR000504 GO:0003723
Prci9g2055 555 CDD RRM1_RBM39_like 187 259 - -
Prci9g2055 555 FunFam Splicing factor CC1-like 115 271 - -
Prci9g2055 555 Coils Coil 121 143 - -
Prci9g2055 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 366 IPR000504 GO:0003723
Prci9g2055 555 FunFam Splicing factor, CC1-like protein 456 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2055 Prci-Chr9 31235587 31242305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2055 268 361 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 6.19e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2055 K13091 - qsa:O6P43_030384 669.848