Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci9g2055 | ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTTGAGGAGCAGGAAGATCGAGATTCGACGAAGAAGAAGAAGGAGAGCAGCGAAAAGGGTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGGTAACCTGGATGGTGAGGAAAAGAAGAGCAAGAAGAACAGAAGTGACGAGGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGACAGAGGACGTTCCAGCCGTGAAAAGGAGCCACAGGAGCGGCAGGGAGGGGAAGGGGAGAGAGAGCGGGAGAGGAGTAGTAGAGAGAAGGGGAGAGACAAAGAGTGGGACAAGGATAGGGAGAGGGATAGAGAAAGAAGAGACAAAGAGAGAGAGAGGGACAAAGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGAGAACGAGAACTGGAATTTAGAGATAGCCGGAGATTCAGAGATAAGAAAGAGGCCGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCGTACCAGATGCCCTTAAAGGCCGCAGAGAGAGATGTTTATGATTTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTCCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAAAGCCAGCTGAGGGAAATTTTTGAGCCGTTTGGTCCTGTGGAGCTTGTGCAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGATATTGCTGGTAGGACTATCAAGGTTTCATGTGTAACAGATCATGTCGGGAGCCAAGATACAAGTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTAATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGCAGGGTCCGTTGGTGTGCCTGCTGTGAATGGGTCAGTTTCTGCTCAACAGCCTGTTAGCTTGCCCAGTGCTTCAGGTTTAATGCCTGCACCAGCTCTCCCAACACAAATTATGCCTTCCCCAGTGGCAGAGCCTGTAGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGATCTATGCACATGAGATGGTTTGCACGTAGGTTGATTTCAGCTATTTTCATGCCACCCCAGCTATATGAAGCCAAGTTTAAGGCGGAAGCTTGA | 1665 | 0.4715 | MDFDEYDYLEKTVEEQEDRDSTKKKKESSEKGERSYRKREVDGNLDGEEKKSKKNRSDEENGSKKDRDDRDRGRSSREKERXQERQGGEGERERERSSREKGRDKEWDKDRERDRERRDKERERDKERERERERREREERERSRRSRSRSDRDRERERELEFRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKAAERDVYDFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLDIAGRTIKVSCVTDHVGSQDTSAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPAVNGSVSAQQPVSLPSASGLMPAPALPTQIMPSPVAEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKRSAGFVYLRFESVEAASAAQRSMHMRWFARRLISAIFMPPQLYEAKFKAEA | 555 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci9g2055 | 555 | Coils | Coil | 552 | 555 | - | - | |
Prci9g2055 | 555 | Gene3D | - | 284 | 380 | IPR012677 | - | |
Prci9g2055 | 555 | SMART | rrm1_1 | 289 | 362 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | SMART | rrm1_1 | 187 | 259 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | SMART | rrm1_1 | 462 | 539 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | CDD | RRM3_RBM39_like | 460 | 543 | - | - | |
Prci9g2055 | 555 | MobiDBLite | consensus disorder prediction | 1 | 142 | - | - | |
Prci9g2055 | 555 | SUPERFAMILY | RNA-binding domain, RBD | 288 | 542 | IPR035979 | GO:0003676 | |
Prci9g2055 | 555 | Gene3D | - | 179 | 273 | IPR012677 | - | |
Prci9g2055 | 555 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 381 | 479 | IPR029123 | - | |
Prci9g2055 | 555 | NCBIfam | splicing factor, CC1-like family | 70 | 552 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Prci9g2055 | 555 | FunFam | Splicing factor CC1-like | 272 | 377 | - | - | |
Prci9g2055 | 555 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 290 | 360 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 255 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 484 | 537 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 552 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Prci9g2055 | 555 | MobiDBLite | consensus disorder prediction | 12 | 142 | - | - | |
Prci9g2055 | 555 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 267 | IPR035979 | GO:0003676 | |
Prci9g2055 | 555 | Gene3D | - | 457 | 555 | IPR012677 | - | |
Prci9g2055 | 555 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 263 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | CDD | RRM1_RBM39_like | 187 | 259 | - | - | |
Prci9g2055 | 555 | FunFam | Splicing factor CC1-like | 115 | 271 | - | - | |
Prci9g2055 | 555 | Coils | Coil | 121 | 143 | - | - | |
Prci9g2055 | 555 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 288 | 366 | IPR000504 | GO:0003723 | |
Prci9g2055 | 555 | FunFam | Splicing factor, CC1-like protein | 456 | 555 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci9g2055 | Prci-Chr9 | 31235587 | 31242305 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci9g2055 | 268 | 361 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.789 | 6.19e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci9g2055 | K13091 | - | qsa:O6P43_030384 | 669.848 |