Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2052 ATGGGTGTTGCGGATCTGCCGCGGAAGGAGGTTAATGTACTGAAAGGGCATGAGGGCGCCGTACTGGCTGCGAGATTCAACAGCGACGGTAATTATTGCCTAAGTTGCGGCAAAGACCGTACCATCCGTCTCTGGAATCCTCACCGTGGTATTCATATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCACGTCACCTTGGACAACTCCAAGTTATGTTCCTGCGGTGGAGATCGACAGATCTTTTACTGGGATGTGGCAACTGGACGTGTAATTCGAAAATTTCGGGGTCATGATGGTGAGGTAAATGCTGTAAGGTTCAATGAGCATGCATCTGTTGTAGTTTCGGCTGGCTATGATCAATCATTGCGTGCTTGGGACTGCAGATCCCACAGCACTGAGCCAATTCAGATTATCGACACATTTTCAGATAGTGTTATGTCTGTTTGTTTGACAAAAACTGAAATTATCGGTGGTAGTGTTGATGGAACTGTTCGAACATTTGACATCCGTGTTGGCAGAGAAACATCTGATGATTTGGGGCAACCTGTCAACTGTATTTCAATGTCAAATGATGGTAATTGCATACTAGCCAGTTGTTTAGATTCCACTCTTCGACTTTTGGACAGAACGACAGGTGAACTATTGCAACAATACAAAGGCCATACTTGTAAGTCTTATAAATTGGATTGCTGCCTTACCAATACGGATGCCCATGTGACCGGTGGCTCTGAGGATGGCTTCATCTATTTTTGGGATCTTGTAGATGCATCAGTTGTGTCAAGATTCAGAGCTCACACCTCAGTGGTAACAAGCGTGAGTTATCACCCAAAAGAAAACTGTATGATAAGTTCTTCTGTGGATGGCTACATACGTGTTTGGAAGTCATGA 900 0.4511 MGVADLPRKEVNVLKGHEGAVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTLDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNAVRFNEHASVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRETSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRTTGELLQQYKGHTCKSYKLDCCLTNTDAHVTGGSEDGFIYFWDLVDASVVSRFRAHTSVVTSVSYHPKENCMISSSVDGYIRVWKS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2052 299 FunFam WD repeat domain-containing protein 83 5 299 - -
Prci9g2052 299 PANTHER WD40 REPEAT PROTEIN 4 297 - -
Prci9g2052 299 Gene3D - 6 299 IPR015943 GO:0005515
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 299 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 91 130 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 135 172 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 176 212 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 259 298 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 215 256 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 49 88 IPR001680 GO:0005515
Prci9g2052 299 SMART WD40_4 7 46 IPR001680 GO:0005515
Prci9g2052 299 CDD WD40 10 298 - -
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Prci9g2052 299 SUPERFAMILY WD40 repeat-like 7 298 IPR036322 GO:0005515
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Prci9g2052 299 Pfam WD domain, G-beta repeat 216 256 IPR001680 GO:0005515
Prci9g2052 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2052 Prci-Chr9 31200284 31203522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2052 13 296 Eukaryotic Initiation Factors Gene Family AT2G46290 21.875 6.13e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2052 K13124 - qsa:O6P43_030380 575.089