Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2048 ATGGATTTGGACGATTTCCGATCCATCTTGGAGACTGCGGGCGTTGACGTTTGGACTTTTATCGACACCGCAATTACCGTCGCTTCCTTGGATTACGGCAATGACTTGAAGTATCGCCGGGACGGAATCGTTGAGCGCCTCTACGGGGCTACTTCCGCTCCCGCGTCCTGTCGGAATTGCGAGCCCAATCATCTCACGTCTAACGGCCGCGGAATTAGCCCCCCAATCAAGAAGCAAAGCAGTCCTCTCCCCGACAGAAGTCGTGCCTCTCCTGCAACGCCGCAATCCCCCGGTAAAGACGACAACGAAGACGACGAGGAGATAGATCCTTACGGAGGTTTGTTCGATGATGAGCCCAAGAAGATTCTTGAGATTAAGGAGCAACTTGAAGACCCTAACCAGTCTGAAGAATCATTGGTGGACTTGCTGCAAAATCTCGCGGACATGGATATCACATTCCAAGCGCTGAAGGACACTGACATTGGGAGGCATGTGAATCGTTTGCGAAAGCATTCATCCAATGATGTTCGGCGATTGGTGAAGCTCCTTGTCAGGAAATGGAAAGATATTGTCGATGAATGGGTGAAGTTAAATCCACCGGCAGAGCACGCCTCTCTCATGGCTGATGGAGACTCGCCTCAGCCCAAAACCACCGCCCAAAACGGCTATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACATAATGGTAGTTCTGGGTCGGACTGGAACAATTCAGAAGCAGAACTAAAACCAAAACCAATTCCTCGGAAAGAAGCCCCACCAAAACCAGCGCCATCTGTCTCTGTATCCGCTTCTGCTCCGCCTCAAAACAGACAGAGAGAACAGAGGGAGAGCAGTTTTGACGCGGAGAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAGGAAGCGGAAAATGCCAAAAAGCAAAGAACCATTCAGGTGATGGACATCCACGAGCTCCCAAAACCAAAAGCCAAGAATGCCTTCTTTGCGAAGAACAAAGGCGCGGGCGGTTCTCAGGGAAGGCACTGGTGA 1050 0.5086 MDLDDFRSILETAGVDVWTFIDTAITVASLDYGNDLKYRRDGIVERLYGATSAPASCRNCEPNHLTSNGRGISPPIKKQSSPLPDRSRASPATPQSPGKDDNEDDEEIDPYGGLFDDEPKKILEIKEQLEDPNQSEESLVDLLQNLADMDITFQALKDTDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVKLNPPAEHASLMADGDSPQPKTTAQNGYHQIPDFAYSPNPHNGSSGSDWNNSEAELKPKPIPRKEAPPKPAPSVSVSASAPPQNRQREQRESSFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKPKAKNAFFAKNKGAGGSQGRHW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2048 349 MobiDBLite consensus disorder prediction 283 312 - -
Prci9g2048 349 Pfam TFIIS helical bundle-like domain 142 191 IPR017923 -
Prci9g2048 349 CDD TFIIS_I 120 192 - -
Prci9g2048 349 MobiDBLite consensus disorder prediction 55 116 - -
Prci9g2048 349 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 204 IPR035441 -
Prci9g2048 349 Coils Coil 291 318 - -
Prci9g2048 349 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 349 IPR044790 -
Prci9g2048 349 MobiDBLite consensus disorder prediction 83 97 - -
Prci9g2048 349 SMART TFS2_5 122 193 IPR003617 GO:0005634
Prci9g2048 349 MobiDBLite consensus disorder prediction 330 349 - -
Prci9g2048 349 MobiDBLite consensus disorder prediction 56 75 - -
Prci9g2048 349 ProSiteProfiles TFIIS N-terminal domain profile. 117 194 IPR017923 -
Prci9g2048 349 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 201 IPR035441 -
Prci9g2048 349 MobiDBLite consensus disorder prediction 211 247 - -
Prci9g2048 349 MobiDBLite consensus disorder prediction 204 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2048 Prci-Chr9 31166783 31169605 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci9g2048 Med26 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2048 - - aip:107622503 479.559