Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2034 ATGCATGCTTCTTCTTCTTCCTCTACCTCGCTGCTTCTCCAGAATCTTCTTGGGGATTTCCATTCAAGAAGGTTGCTCCTTCTCCACAACCCGCTTAACTCACAGGCCAGCCCTCCGGCTTCCTTAAACACCCGCAATTCGACAGACAACTACCTCGGGAGTGGCAACTTCGATGCAAATGTTGTTATGGTGCTCTCCGTGTTACTGTGTGCTCTTCTTTGCTCTCTGGGCTTGAACTCCATCATAAGGTGTGCCCTGAGGTGTTCCGATCTGGTGGTTAGCTTCGAGTCCGGGAGCAATAACCCTCCGGCTCGATTGGCCAACACTGGATTGAAGAAGAAGGCTCTCAAGACTTTCCCCACCGTAAACTATTCTGCCGAGCTGAAGCTTCCGGGTTTGGACACGGAGTGCGTGATATGCTTGTCAGAGTTCACCAATGGCGAACGTGTCAGGATTTTGCCAAAGTGCAACCATGGCTTCCATGTGAAATGCATTGACAAGTGGCTGAGTTCCCACTCGTCCTGTCCCAAGTGCAGACAGTGCCTGGTTCAAACTTGCCAGAAGATTGTCGGATGCACCACCCAGGCTAGCTCGTCCCACCAACCCGAAACCATTGTCACGATCGCGCCGCTCGATCCAGAAGGTCTGGTTCGTAACTACAGGGAAGTGAGCACTTAA 678 0.5192 MHASSSSSTSLLLQNLLGDFHSRRLLLLHNPLNSQASPPASLNTRNSTDNYLGSGNFDANVVMVLSVLLCALLCSLGLNSIIRCALRCSDLVVSFESGSNNPPARLANTGLKKKALKTFPTVNYSAELKLPGLDTECVICLSEFTNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCQKIVGCTTQASSSHQPETIVTIAPLDPEGLVRNYREVST 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2034 225 CDD RING-H2_EL5-like 136 179 - -
Prci9g2034 225 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Prci9g2034 225 SMART ring_2 137 178 IPR001841 -
Prci9g2034 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Prci9g2034 225 PANTHER RING-H2 FINGER PROTEIN ATL78 15 216 IPR044602 GO:0016567|GO:0016740
Prci9g2034 225 SUPERFAMILY RING/U-box 115 184 - -
Prci9g2034 225 FunFam RING-H2 finger protein ATL73 99 184 - -
Prci9g2034 225 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2034 Prci-Chr9 31098344 31099242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2034 32 183 C3H Transcription Factor Family AT3G10910 50.311 3.02e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2034 K19040 - gmx:100807227 300.441